miRNA display CGI


Results 61 - 80 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 15571 0.76 0.150433
Target:  5'- cGCCGCCGCGGcggggagugGCGacgacuccaCGGAUGCagucGCGGGCg -3'
miRNA:   3'- -CGGCGGUGCC---------UGC---------GCCUGCG----CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 15893 0.71 0.332443
Target:  5'- cGUCGaaaCCGCGGGCGgGGugGgaaGgGGGCg -3'
miRNA:   3'- -CGGC---GGUGCCUGCgCCugCg--CgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 16064 0.72 0.267872
Target:  5'- gGUCGCUggGGGCgGCGGGCGUcuguGgGGGCa -3'
miRNA:   3'- -CGGCGGugCCUG-CGCCUGCG----CgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 16167 0.74 0.21089
Target:  5'- -gCGCCACGGGCgGCccgcggggaccggggGGACGCaCGGGCc -3'
miRNA:   3'- cgGCGGUGCCUG-CG---------------CCUGCGcGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 16221 0.73 0.239573
Target:  5'- cGCCGCCuguGgGGGgGCGGugGgGCcgGGGCc -3'
miRNA:   3'- -CGGCGG---UgCCUgCGCCugCgCG--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 16615 0.66 0.594677
Target:  5'- gGCuCGUgACGGAC---GACGCGCcgGGGCa -3'
miRNA:   3'- -CG-GCGgUGCCUGcgcCUGCGCG--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 17119 0.66 0.604182
Target:  5'- gGCCGCC-CGcGA-GCGGuagUGCGCGgugaGGCg -3'
miRNA:   3'- -CGGCGGuGC-CUgCGCCu--GCGCGC----CCG- -5'
5520 3' -64.1 NC_001798.1 + 17228 0.69 0.424025
Target:  5'- gGCCGCCuuu--CGgGGuCGCGCGGGg -3'
miRNA:   3'- -CGGCGGugccuGCgCCuGCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 19136 0.68 0.475122
Target:  5'- aUCGCCACGaaGACcaacGACGCGUGGGUg -3'
miRNA:   3'- cGGCGGUGC--CUGcgc-CUGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 19981 0.7 0.35392
Target:  5'- aGCC-CCGcCGGACGCGGAUuC-CGGGUu -3'
miRNA:   3'- -CGGcGGU-GCCUGCGCCUGcGcGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 20174 0.68 0.449173
Target:  5'- aGCuCGCaCACGGGCuCGG-CG-GCGGGUu -3'
miRNA:   3'- -CG-GCG-GUGCCUGcGCCuGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 21808 0.74 0.199529
Target:  5'- cCCGCCucgggGCGGAgccCGCgGGAUGaCGCGGGCc -3'
miRNA:   3'- cGGCGG-----UGCCU---GCG-CCUGC-GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 21944 0.76 0.161567
Target:  5'- cCCGCCcccuuuggGCGGAgCGCgGGAUGaCGCGGGCc -3'
miRNA:   3'- cGGCGG--------UGCCU-GCG-CCUGC-GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 22143 0.68 0.466387
Target:  5'- gGCCGgCGgGGGCcaaCGGGaGCGCGGGg -3'
miRNA:   3'- -CGGCgGUgCCUGc--GCCUgCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 22260 0.77 0.133418
Target:  5'- aGCCGCCcgcgcCGGGCGCuaauGAgaugcCGCGCGGGCg -3'
miRNA:   3'- -CGGCGGu----GCCUGCGc---CU-----GCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 22326 1.13 0.000387
Target:  5'- cGCCGCCACGGACGCGGACGCGCGGGCg -3'
miRNA:   3'- -CGGCGGUGCCUGCGCCUGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 22873 0.66 0.594677
Target:  5'- cCCGCCGCGcGGCccggguucggGUGGcACG-GUGGGCc -3'
miRNA:   3'- cGGCGGUGC-CUG----------CGCC-UGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 22996 0.68 0.501798
Target:  5'- aGCCuGCCGCGGACgGCGucgucuCGC-CGcGGCa -3'
miRNA:   3'- -CGG-CGGUGCCUG-CGCcu----GCGcGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 23220 0.7 0.366519
Target:  5'- gGCCGCUggguccGCGGAccggagacgacgucCGCGGucCGCG-GGGCg -3'
miRNA:   3'- -CGGCGG------UGCCU--------------GCGCCu-GCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 23519 0.74 0.201385
Target:  5'- cGCCGCgggcgggacccucggCGCGGACGacgaGGAgGCGgGGGUg -3'
miRNA:   3'- -CGGCG---------------GUGCCUGCg---CCUgCGCgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.