miRNA display CGI


Results 1 - 20 of 477 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 60 0.71 0.332443
Target:  5'- gGgCGCgaagGCGGGCgGCGGcgGCGgGCGGGCg -3'
miRNA:   3'- -CgGCGg---UGCCUG-CGCC--UGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 172 0.77 0.143402
Target:  5'- cGCgCGCCGCGGGgcugccuuccCGCGGGCGCccccGCGcGGCu -3'
miRNA:   3'- -CG-GCGGUGCCU----------GCGCCUGCG----CGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 227 0.67 0.547619
Target:  5'- cCCGCCcccgcgcgGCaGGACGgGGACuaGCaGGCu -3'
miRNA:   3'- cGGCGG--------UG-CCUGCgCCUGcgCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 439 0.69 0.440698
Target:  5'- cGCgCGCCACGGGgcUGCGGuCcCGCGGccGCc -3'
miRNA:   3'- -CG-GCGGUGCCU--GCGCCuGcGCGCC--CG- -5'
5520 3' -64.1 NC_001798.1 + 653 0.66 0.613706
Target:  5'- cCCcCCGCGGGCGCGGgagACGUGCc-GCc -3'
miRNA:   3'- cGGcGGUGCCUGCGCC---UGCGCGccCG- -5'
5520 3' -64.1 NC_001798.1 + 1195 0.68 0.4991
Target:  5'- cCCGCCGCGGccagcaccguccccGCGCGGcC-CGCGGcCg -3'
miRNA:   3'- cGGCGGUGCC--------------UGCGCCuGcGCGCCcG- -5'
5520 3' -64.1 NC_001798.1 + 1271 0.67 0.519028
Target:  5'- cGUCGUCGCGcagcaccaGCGgGGGCGCGUcgccgucGGGCu -3'
miRNA:   3'- -CGGCGGUGCc-------UGCgCCUGCGCG-------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 1337 0.69 0.432315
Target:  5'- cCCGCCGCGGcccGCGCaGcucCGC-CGGGCc -3'
miRNA:   3'- cGGCGGUGCC---UGCGcCu--GCGcGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 1405 0.68 0.465519
Target:  5'- gGCCGCaGCGGcGCGCccaGGccccagcGCGCGCaGGCg -3'
miRNA:   3'- -CGGCGgUGCC-UGCG---CC-------UGCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 1533 0.72 0.279926
Target:  5'- cGCCGggagCACGG-CGCGGcgguacuCGCGCGGGg -3'
miRNA:   3'- -CGGCg---GUGCCuGCGCCu------GCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 1623 0.66 0.58425
Target:  5'- gGCC-CCGCGGcagaggcGCaGCGGcgGCGCGuCGGGg -3'
miRNA:   3'- -CGGcGGUGCC-------UG-CGCC--UGCGC-GCCCg -5'
5520 3' -64.1 NC_001798.1 + 1749 0.66 0.566328
Target:  5'- cGCCGCCgGCcaGCGCacGGCGCacugcacgGCGGGCa -3'
miRNA:   3'- -CGGCGG-UGccUGCGc-CUGCG--------CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 1810 0.7 0.38405
Target:  5'- uGCUGCCGCGaGACcaCGGGCccGUcgGCGGGCc -3'
miRNA:   3'- -CGGCGGUGC-CUGc-GCCUG--CG--CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2204 0.79 0.099583
Target:  5'- gGCCGCCGCGcGGCGCagcgggcccgaGGcGCGCaGCGGGCc -3'
miRNA:   3'- -CGGCGGUGC-CUGCG-----------CC-UGCG-CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2260 0.77 0.132456
Target:  5'- cGCCGCCgggggGCGGggcggcgcagcGCGCGGccagcgaggccagcGCGCGCGGGUc -3'
miRNA:   3'- -CGGCGG-----UGCC-----------UGCGCC--------------UGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2331 0.73 0.262004
Target:  5'- gGgCGCCACGG-CGCGGG-GaagaGCGGGUg -3'
miRNA:   3'- -CgGCGGUGCCuGCGCCUgCg---CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2367 0.66 0.575745
Target:  5'- aGCUcgGCCACGGccCGCGGG-GCGCaguaggccuccaGGGCn -3'
miRNA:   3'- -CGG--CGGUGCCu-GCGCCUgCGCG------------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 2408 0.69 0.407735
Target:  5'- gGCgGCCGaGGGCGCcGGCGUGUggcuGGGCc -3'
miRNA:   3'- -CGgCGGUgCCUGCGcCUGCGCG----CCCG- -5'
5520 3' -64.1 NC_001798.1 + 2458 0.71 0.318664
Target:  5'- aGCCGCCcuGCGGGuCGgGGcccuCG-GCGGGCc -3'
miRNA:   3'- -CGGCGG--UGCCU-GCgCCu---GCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 2517 0.7 0.361294
Target:  5'- gGCCGCgGCGGcgGCGUcggcgGGGCGgG-GGGCg -3'
miRNA:   3'- -CGGCGgUGCC--UGCG-----CCUGCgCgCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.