miRNA display CGI


Results 21 - 40 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 16615 0.66 0.594677
Target:  5'- gGCuCGUgACGGAC---GACGCGCcgGGGCa -3'
miRNA:   3'- -CG-GCGgUGCCUGcgcCUGCGCG--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 52870 0.66 0.594677
Target:  5'- uCCGUgCugGGGcCGCGGGucCGCGCGuGGa -3'
miRNA:   3'- cGGCG-GugCCU-GCGCCU--GCGCGC-CCg -5'
5520 3' -64.1 NC_001798.1 + 58095 0.66 0.594677
Target:  5'- gGCC-CCGCaGGGuCGCGGcCGCccaGGGCc -3'
miRNA:   3'- -CGGcGGUG-CCU-GCGCCuGCGcg-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 67560 0.66 0.594677
Target:  5'- cGCCGCCAgGGG---GGGCGaccuCGGGCu -3'
miRNA:   3'- -CGGCGGUgCCUgcgCCUGCgc--GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 120387 0.66 0.594677
Target:  5'- -aCGCaGCGGGCGauGucCGCGgGGGCc -3'
miRNA:   3'- cgGCGgUGCCUGCgcCu-GCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 125876 0.66 0.594677
Target:  5'- gGCCGCCAaggcggcccacuUGGAauUGGAgGCGCG-GCu -3'
miRNA:   3'- -CGGCGGU------------GCCUgcGCCUgCGCGCcCG- -5'
5520 3' -64.1 NC_001798.1 + 131975 0.66 0.594677
Target:  5'- aUCGCCAUGGACGCcaccgccaACGCGCagcuGGUg -3'
miRNA:   3'- cGGCGGUGCCUGCGcc------UGCGCGc---CCG- -5'
5520 3' -64.1 NC_001798.1 + 22873 0.66 0.594677
Target:  5'- cCCGCCGCGcGGCccggguucggGUGGcACG-GUGGGCc -3'
miRNA:   3'- cGGCGGUGC-CUG----------CGCC-UGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 48099 0.66 0.593728
Target:  5'- aGCC-CCACGG-CGCcguggaccccccgGGugGC-CGGGUu -3'
miRNA:   3'- -CGGcGGUGCCuGCG-------------CCugCGcGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 139703 0.66 0.585196
Target:  5'- cGUgGUCACGGGCGCcaccGAauCGCGGcGCa -3'
miRNA:   3'- -CGgCGGUGCCUGCGc---CUgcGCGCC-CG- -5'
5520 3' -64.1 NC_001798.1 + 114483 0.66 0.585196
Target:  5'- cCUGCuCACGGGgGaggcccuGGACGgGaCGGGCa -3'
miRNA:   3'- cGGCG-GUGCCUgCg------CCUGCgC-GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 108580 0.66 0.585196
Target:  5'- --gGCCugGGuaacauuCGCGGcCGCGCcggaccgcgagGGGCu -3'
miRNA:   3'- cggCGGugCCu------GCGCCuGCGCG-----------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 94528 0.66 0.585196
Target:  5'- aGCCGCguguuguuCGCGGGCGCGaGCGCcaacGCGuccgaGGCc -3'
miRNA:   3'- -CGGCG--------GUGCCUGCGCcUGCG----CGC-----CCG- -5'
5520 3' -64.1 NC_001798.1 + 29820 0.66 0.585196
Target:  5'- gGCCGCCGCGGcagACcccCGGcACGgUGagaGGGCg -3'
miRNA:   3'- -CGGCGGUGCC---UGc--GCC-UGC-GCg--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 34100 0.66 0.585196
Target:  5'- aCCGgCGCguggGGGCgGUGGGCGUaCGGGCc -3'
miRNA:   3'- cGGCgGUG----CCUG-CGCCUGCGcGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 92399 0.66 0.585196
Target:  5'- cGUgGCCGCGGuCGuCGGGuccCGCacgaCGGGCc -3'
miRNA:   3'- -CGgCGGUGCCuGC-GCCU---GCGc---GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 124772 0.66 0.585196
Target:  5'- gGUCGCCuuGCGGAUGUGGGC-CGUGuaGCc -3'
miRNA:   3'- -CGGCGG--UGCCUGCGCCUGcGCGCc-CG- -5'
5520 3' -64.1 NC_001798.1 + 139352 0.66 0.585196
Target:  5'- uGCgGCCAUGGcgGCGUccggcggggaGGGCuCGCGGGa -3'
miRNA:   3'- -CGgCGGUGCC--UGCG----------CCUGcGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 60846 0.66 0.585196
Target:  5'- uCCGCuCGCGcGGCGaCGGGauCGCGUccuccgaagggGGGCg -3'
miRNA:   3'- cGGCG-GUGC-CUGC-GCCU--GCGCG-----------CCCG- -5'
5520 3' -64.1 NC_001798.1 + 43690 0.66 0.585196
Target:  5'- gGUgGUCACGGcccggagauGCGUGGccAgGCGCGGGg -3'
miRNA:   3'- -CGgCGGUGCC---------UGCGCC--UgCGCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.