miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 134492 0.67 0.853072
Target:  5'- uGGCCGC-CAUucgcgacagcccccAGUGCGcGUccUCCGCCUc -3'
miRNA:   3'- cCCGGCGcGUA--------------UUACGC-CA--AGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 43530 0.67 0.84833
Target:  5'- cGGCCGCGUcucccgccaggGCGGUUUC-CCUg -3'
miRNA:   3'- cCCGGCGCGuauua------CGCCAAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 96173 0.67 0.847533
Target:  5'- cGGCCGCGCccccgGccGCGGUUUCcgaGCCc -3'
miRNA:   3'- cCCGGCGCGua---UuaCGCCAAGG---UGGa -5'
5520 5' -55.9 NC_001798.1 + 23667 0.67 0.847533
Target:  5'- cGGGcCCGCGCg----GCGGUggCCgGCCg -3'
miRNA:   3'- -CCC-GGCGCGuauuaCGCCAa-GG-UGGa -5'
5520 5' -55.9 NC_001798.1 + 51474 0.67 0.847533
Target:  5'- cGGGCCGCGUGUcgggcccgGAgcugcagGCGGcaUUCCcCCUg -3'
miRNA:   3'- -CCCGGCGCGUA--------UUa------CGCC--AAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 24827 0.67 0.847533
Target:  5'- gGGGaCCuGCGCGUGGccgGCGGcagcgaggCCGCCg -3'
miRNA:   3'- -CCC-GG-CGCGUAUUa--CGCCaa------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 127727 0.66 0.910744
Target:  5'- cGGCUGCuCGUAaaaAUGCGG--CCGCCg -3'
miRNA:   3'- cCCGGCGcGUAU---UACGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 149477 0.66 0.910744
Target:  5'- gGGGCCGCgGCccgcaGCaGG-UCCGCCa -3'
miRNA:   3'- -CCCGGCG-CGuauuaCG-CCaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 31346 0.66 0.914303
Target:  5'- gGGGCgCGCGCAggcGcgGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CCCG-GCGCGUa--UuaCGCCaag--------GUGGa -5'
5520 5' -55.9 NC_001798.1 + 28258 0.66 0.914888
Target:  5'- -cGCCGCGCAaggAGcGCGGgccgcagcgcccccUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGUa--UUaCGCC--------------AAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 41177 0.66 0.920606
Target:  5'- cGGCCG-GCGUAGUucaaaagauaggucGcCGGggCCACCa -3'
miRNA:   3'- cCCGGCgCGUAUUA--------------C-GCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 109803 0.66 0.921165
Target:  5'- cGGGCCGCGCuagcca-GGaccgaCCACCa -3'
miRNA:   3'- -CCCGGCGCGuauuacgCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 121715 0.66 0.898268
Target:  5'- -cGCCGCGaCGgagGcgGCGGc-CCACCUg -3'
miRNA:   3'- ccCGGCGC-GUa--UuaCGCCaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 150579 0.66 0.898268
Target:  5'- gGGGCgGCGCGgagAcgGCGGgggagagUCGCUg -3'
miRNA:   3'- -CCCGgCGCGUa--UuaCGCCaa-----GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 24773 0.66 0.898268
Target:  5'- uGGCUGCGCGagcUGCGGUUCgugCGCg- -3'
miRNA:   3'- cCCGGCGCGUauuACGCCAAG---GUGga -5'
5520 5' -55.9 NC_001798.1 + 146427 0.66 0.898268
Target:  5'- -aGCCGgGCAgAGUGCGGagCCcCCg -3'
miRNA:   3'- ccCGGCgCGUaUUACGCCaaGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 103164 0.66 0.896316
Target:  5'- aGGGCCacguGCGCAaacagGGUGCGGUcgggcggaaccucgUCCcCCc -3'
miRNA:   3'- -CCCGG----CGCGUa----UUACGCCA--------------AGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 86097 0.66 0.891681
Target:  5'- cGGCUGCGCGccgccGCGGacgcCCGCCg -3'
miRNA:   3'- cCCGGCGCGUauua-CGCCaa--GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 12713 0.66 0.891681
Target:  5'- gGGGCgGCggggGCGUGGUGCGGcgCgACg- -3'
miRNA:   3'- -CCCGgCG----CGUAUUACGCCaaGgUGga -5'
5520 5' -55.9 NC_001798.1 + 13882 0.66 0.891681
Target:  5'- uGGUCGaaucggaGUAUGgugGUGCGGUgggUCCGCCa -3'
miRNA:   3'- cCCGGCg------CGUAU---UACGCCA---AGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.