miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 24588 0.72 0.628991
Target:  5'- cGGGCCGCGUGgccguggAGUGCcuggCCGCCUg -3'
miRNA:   3'- -CCCGGCGCGUa------UUACGccaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 24189 0.69 0.796384
Target:  5'- gGGGCCugGCGCAcgugGCGG--CCGCCg -3'
miRNA:   3'- -CCCGG--CGCGUauuaCGCCaaGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 23834 0.67 0.867605
Target:  5'- gGGGCgCGUGCuGUAcgGCGGgcugggcgacagCCGCCc -3'
miRNA:   3'- -CCCG-GCGCG-UAUuaCGCCaa----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 23667 0.67 0.847533
Target:  5'- cGGGcCCGCGCg----GCGGUggCCgGCCg -3'
miRNA:   3'- -CCC-GGCGCGuauuaCGCCAa-GG-UGGa -5'
5520 5' -55.9 NC_001798.1 + 22361 1.1 0.002493
Target:  5'- gGGGCCGCGCAUAAUGCGGUUCCACCUg -3'
miRNA:   3'- -CCCGGCGCGUAUUACGCCAAGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 21720 0.67 0.862338
Target:  5'- -cGCCGCGCAgccggugugccccUGGUGCGGcggCgACCg -3'
miRNA:   3'- ccCGGCGCGU-------------AUUACGCCaa-GgUGGa -5'
5520 5' -55.9 NC_001798.1 + 13882 0.66 0.891681
Target:  5'- uGGUCGaaucggaGUAUGgugGUGCGGUgggUCCGCCa -3'
miRNA:   3'- cCCGGCg------CGUAU---UACGCCA---AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 12713 0.66 0.891681
Target:  5'- gGGGCgGCggggGCGUGGUGCGGcgCgACg- -3'
miRNA:   3'- -CCCGgCG----CGUAUUACGCCaaGgUGga -5'
5520 5' -55.9 NC_001798.1 + 9725 0.73 0.557799
Target:  5'- cGGGCUgGCGCugggggaGGUGCuGUUCCACCa -3'
miRNA:   3'- -CCCGG-CGCGua-----UUACGcCAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 5955 0.66 0.904623
Target:  5'- aGGGCCG-GCGUcc--CGGUcgCCGCCg -3'
miRNA:   3'- -CCCGGCgCGUAuuacGCCAa-GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 5880 0.68 0.814116
Target:  5'- gGGGcCCGCGuCAUcccGCGGgcUCCGCCc -3'
miRNA:   3'- -CCC-GGCGC-GUAuuaCGCCa-AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 5305 0.66 0.917204
Target:  5'- -cGCCGCGCcccggcucgccGgGGUUCCGCCc -3'
miRNA:   3'- ccCGGCGCGuauua------CgCCAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 4838 0.69 0.787291
Target:  5'- cGGGCCGCGCg----GCGGggCgACg- -3'
miRNA:   3'- -CCCGGCGCGuauuaCGCCaaGgUGga -5'
5520 5' -55.9 NC_001798.1 + 2965 0.7 0.710279
Target:  5'- gGGGCgCGUcgGCGUGcgGCGGggCgGCCg -3'
miRNA:   3'- -CCCG-GCG--CGUAUuaCGCCaaGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 2222 0.67 0.884866
Target:  5'- cGGGCCcgaggcGCGCAgcgggccgaagGcgGCGGgcgcgCCGCCg -3'
miRNA:   3'- -CCCGG------CGCGUa----------UuaCGCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 1587 0.68 0.814116
Target:  5'- gGGGCCgaaGCGCGUGcgcacGCGGUaCCGCa- -3'
miRNA:   3'- -CCCGG---CGCGUAUua---CGCCAaGGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.