miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 43530 0.67 0.84833
Target:  5'- cGGCCGCGUcucccgccaggGCGGUUUC-CCUg -3'
miRNA:   3'- cCCGGCGCGuauua------CGCCAAGGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 96173 0.67 0.847533
Target:  5'- cGGCCGCGCccccgGccGCGGUUUCcgaGCCc -3'
miRNA:   3'- cCCGGCGCGua---UuaCGCCAAGG---UGGa -5'
5520 5' -55.9 NC_001798.1 + 23667 0.67 0.847533
Target:  5'- cGGGcCCGCGCg----GCGGUggCCgGCCg -3'
miRNA:   3'- -CCC-GGCGCGuauuaCGCCAa-GG-UGGa -5'
5520 5' -55.9 NC_001798.1 + 65743 0.67 0.870569
Target:  5'- aGGGCCG-GCAUGAUgcugGCGGUgCCGg-- -3'
miRNA:   3'- -CCCGGCgCGUAUUA----CGCCAaGGUgga -5'
5520 5' -55.9 NC_001798.1 + 143380 0.67 0.870569
Target:  5'- aGGCCccacguGCGCGUccGGUGCGG-UCC-CCg -3'
miRNA:   3'- cCCGG------CGCGUA--UUACGCCaAGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 146427 0.66 0.898268
Target:  5'- -aGCCGgGCAgAGUGCGGagCCcCCg -3'
miRNA:   3'- ccCGGCgCGUaUUACGCCaaGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 103164 0.66 0.896316
Target:  5'- aGGGCCacguGCGCAaacagGGUGCGGUcgggcggaaccucgUCCcCCc -3'
miRNA:   3'- -CCCGG----CGCGUa----UUACGCCA--------------AGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 86097 0.66 0.891681
Target:  5'- cGGCUGCGCGccgccGCGGacgcCCGCCg -3'
miRNA:   3'- cCCGGCGCGUauua-CGCCaa--GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 12713 0.66 0.891681
Target:  5'- gGGGCgGCggggGCGUGGUGCGGcgCgACg- -3'
miRNA:   3'- -CCCGgCG----CGUAUUACGCCaaGgUGga -5'
5520 5' -55.9 NC_001798.1 + 13882 0.66 0.891681
Target:  5'- uGGUCGaaucggaGUAUGgugGUGCGGUgggUCCGCCa -3'
miRNA:   3'- cCCGGCg------CGUAU---UACGCCA---AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 28568 0.67 0.884866
Target:  5'- -cGCCGCGC---GUGCaGGUgcgCCAUCUg -3'
miRNA:   3'- ccCGGCGCGuauUACG-CCAa--GGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 2222 0.67 0.884866
Target:  5'- cGGGCCcgaggcGCGCAgcgggccgaagGcgGCGGgcgcgCCGCCg -3'
miRNA:   3'- -CCCGG------CGCGUa----------UuaCGCCaa---GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 52172 0.67 0.884866
Target:  5'- aGGCCGCGUu---UGCGGggCgCGuCCUg -3'
miRNA:   3'- cCCGGCGCGuauuACGCCaaG-GU-GGA- -5'
5520 5' -55.9 NC_001798.1 + 34975 0.67 0.877827
Target:  5'- cGGCCGC-CGaGGUGCGGgggCC-CCUc -3'
miRNA:   3'- cCCGGCGcGUaUUACGCCaa-GGuGGA- -5'
5520 5' -55.9 NC_001798.1 + 89541 0.67 0.873498
Target:  5'- uGGCCGuCGUagAUGGUGCGGgugauguugaugcCCGCCa -3'
miRNA:   3'- cCCGGC-GCG--UAUUACGCCaa-----------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 51474 0.67 0.847533
Target:  5'- cGGGCCGCGUGUcgggcccgGAgcugcagGCGGcaUUCCcCCUg -3'
miRNA:   3'- -CCCGGCGCGUA--------UUa------CGCC--AAGGuGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.