miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 5' -55.9 NC_001798.1 + 22361 1.1 0.002493
Target:  5'- gGGGCCGCGCAUAAUGCGGUUCCACCUg -3'
miRNA:   3'- -CCCGGCGCGUAUUACGCCAAGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 147254 0.78 0.305117
Target:  5'- cGGGCCGCGCcgGcgGCGuUUCCGCg- -3'
miRNA:   3'- -CCCGGCGCGuaUuaCGCcAAGGUGga -5'
5520 5' -55.9 NC_001798.1 + 25601 0.75 0.424573
Target:  5'- cGGGCCGCGCcgGggGCGGgcCCcCCc -3'
miRNA:   3'- -CCCGGCGCGuaUuaCGCCaaGGuGGa -5'
5520 5' -55.9 NC_001798.1 + 9725 0.73 0.557799
Target:  5'- cGGGCUgGCGCugggggaGGUGCuGUUCCACCa -3'
miRNA:   3'- -CCCGG-CGCGua-----UUACGcCAAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 150346 0.73 0.527926
Target:  5'- cGGGgCGCGCG--GUGCGcgUCCACCg -3'
miRNA:   3'- -CCCgGCGCGUauUACGCcaAGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 91612 0.73 0.567867
Target:  5'- aGGCCGCGCuUAuggGCGGccggCCGCCc -3'
miRNA:   3'- cCCGGCGCGuAUua-CGCCaa--GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 58697 0.73 0.547782
Target:  5'- aGGGCCGCgGCGgcgcgGgGGUcgaUCCACCa -3'
miRNA:   3'- -CCCGGCG-CGUauua-CgCCA---AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 85267 0.73 0.535837
Target:  5'- gGGGCCGCGCGcGAggcuucggggggGCGGgggccggggUCCGCCc -3'
miRNA:   3'- -CCCGGCGCGUaUUa-----------CGCCa--------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 97638 0.73 0.537822
Target:  5'- cGGGCCGcCGCGgacGUGCGGgagCGCCg -3'
miRNA:   3'- -CCCGGC-GCGUau-UACGCCaagGUGGa -5'
5520 5' -55.9 NC_001798.1 + 122627 0.72 0.628991
Target:  5'- cGGGCCGCGCuccaagGCGGcccgcgcaucUUCCagcGCCUg -3'
miRNA:   3'- -CCCGGCGCGuauua-CGCC----------AAGG---UGGA- -5'
5520 5' -55.9 NC_001798.1 + 24588 0.72 0.628991
Target:  5'- cGGGCCGCGUGgccguggAGUGCcuggCCGCCUg -3'
miRNA:   3'- -CCCGGCGCGUa------UUACGccaaGGUGGA- -5'
5520 5' -55.9 NC_001798.1 + 29398 0.72 0.628991
Target:  5'- aGGGCCGCGCcg---GCGGgg-CGCCg -3'
miRNA:   3'- -CCCGGCGCGuauuaCGCCaagGUGGa -5'
5520 5' -55.9 NC_001798.1 + 43036 0.72 0.608527
Target:  5'- gGGGCCccggGCGCA-AAUGCGGcgcgugagCCGCCg -3'
miRNA:   3'- -CCCGG----CGCGUaUUACGCCaa------GGUGGa -5'
5520 5' -55.9 NC_001798.1 + 150631 0.72 0.618754
Target:  5'- uGGGCCGCGCGgggcugucucGCGGggggcguccugcccUCCGCCg -3'
miRNA:   3'- -CCCGGCGCGUauua------CGCCa-------------AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 29446 0.71 0.659684
Target:  5'- gGGGCgGCGCAugcUAAUGgGGUUCUuggaguacACCc -3'
miRNA:   3'- -CCCGgCGCGU---AUUACgCCAAGG--------UGGa -5'
5520 5' -55.9 NC_001798.1 + 67297 0.71 0.666826
Target:  5'- cGGGCCcgagguuccgccgaGCGCcacgAcgGCGGUUCgGCCa -3'
miRNA:   3'- -CCCGG--------------CGCGua--UuaCGCCAAGgUGGa -5'
5520 5' -55.9 NC_001798.1 + 70563 0.71 0.68005
Target:  5'- cGGGCUGCGCAccacggcggcccUGggGcCGGUgcgcgUCCGCCa -3'
miRNA:   3'- -CCCGGCGCGU------------AUuaC-GCCA-----AGGUGGa -5'
5520 5' -55.9 NC_001798.1 + 49643 0.71 0.669882
Target:  5'- uGGGCCGCGUacgccgagcagAUGAUGCGGccCgAUCUg -3'
miRNA:   3'- -CCCGGCGCG-----------UAUUACGCCaaGgUGGA- -5'
5520 5' -55.9 NC_001798.1 + 26497 0.71 0.63923
Target:  5'- cGGGCCGCGCGgg--GaCGGUgcuggCCGCg- -3'
miRNA:   3'- -CCCGGCGCGUauuaC-GCCAa----GGUGga -5'
5520 5' -55.9 NC_001798.1 + 2965 0.7 0.710279
Target:  5'- gGGGCgCGUcgGCGUGcgGCGGggCgGCCg -3'
miRNA:   3'- -CCCG-GCG--CGUAUuaCGCCaaGgUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.