Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5521 | 5' | -59.8 | NC_001798.1 | + | 4378 | 0.71 | 0.455489 |
Target: 5'- cGGCggCGGUGGUGGugGuGGUgGUg -3' miRNA: 3'- aCCGgaGCUACCACCugCuCCGgCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 4863 | 0.66 | 0.729081 |
Target: 5'- cGGgUUCGG-GGUGGGCGGcGGuCCGUc -3' miRNA: 3'- aCCgGAGCUaCCACCUGCU-CC-GGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 5916 | 0.68 | 0.629842 |
Target: 5'- gGGCC-CGGacgGG-GGGCG-GGCCGUUc -3' miRNA: 3'- aCCGGaGCUa--CCaCCUGCuCCGGCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 8782 | 0.7 | 0.520941 |
Target: 5'- aGGCUUCuGccGGgacGGGCGAGGCCGc- -3' miRNA: 3'- aCCGGAG-CuaCCa--CCUGCUCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 11592 | 0.68 | 0.639889 |
Target: 5'- cUGGCCgaUCGcGUGGaauUGGGCGGGGCUa-- -3' miRNA: 3'- -ACCGG--AGC-UACC---ACCUGCUCCGGcaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 11673 | 0.69 | 0.540331 |
Target: 5'- gGGUCUCGggGGgaGGACGGGGgUGUc -3' miRNA: 3'- aCCGGAGCuaCCa-CCUGCUCCgGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 15331 | 0.66 | 0.719379 |
Target: 5'- gGGCCccggcgCGGUagcGGgGGGCGAGGCgGUg -3' miRNA: 3'- aCCGGa-----GCUA---CCaCCUGCUCCGgCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 22748 | 0.72 | 0.411559 |
Target: 5'- gGGCCgaggucgCGAUGGcGGACGAGGaCGg- -3' miRNA: 3'- aCCGGa------GCUACCaCCUGCUCCgGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 22882 | 0.69 | 0.579777 |
Target: 5'- cGGCC-CGGguucgGGUGGcACGguGGGCCGg- -3' miRNA: 3'- aCCGGaGCUa----CCACC-UGC--UCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 23040 | 1.04 | 0.002507 |
Target: 5'- cUGGCCUCGAUGGUGGACGAGGCCGUUc -3' miRNA: 3'- -ACCGGAGCUACCACCUGCUCCGGCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 24551 | 0.69 | 0.530603 |
Target: 5'- gGcGCCggCGGUGGUGG-CGGcGGCCGg- -3' miRNA: 3'- aC-CGGa-GCUACCACCuGCU-CCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 26534 | 0.66 | 0.757667 |
Target: 5'- cGGCgUggaGGUGGUGGggaccgccGCGGGGCUGg- -3' miRNA: 3'- aCCGgAg--CUACCACC--------UGCUCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 29925 | 0.67 | 0.648926 |
Target: 5'- gUGGgCUCGggGGcgGGACGcuugacgGGGCCGa- -3' miRNA: 3'- -ACCgGAGCuaCCa-CCUGC-------UCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 33274 | 0.66 | 0.748234 |
Target: 5'- -uGUCUUGGUgGGUGGGCG-GGCUGg- -3' miRNA: 3'- acCGGAGCUA-CCACCUGCuCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 36847 | 0.7 | 0.492388 |
Target: 5'- cGGCUgugUGGUGgGUGGGgGAGGCaCGUUg -3' miRNA: 3'- aCCGGa--GCUAC-CACCUgCUCCG-GCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 39539 | 0.71 | 0.446499 |
Target: 5'- cGcGCCUCGccgugGGUGGcgcCGGGGCCGUc -3' miRNA: 3'- aC-CGGAGCua---CCACCu--GCUCCGGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 39870 | 0.69 | 0.539355 |
Target: 5'- aGGCUUCGggGGUgccggcguccucgGGGCG-GGCCGg- -3' miRNA: 3'- aCCGGAGCuaCCA-------------CCUGCuCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 42616 | 0.72 | 0.394735 |
Target: 5'- cGGCCUCGucguccgGGAgGGGGCCGUg -3' miRNA: 3'- aCCGGAGCuacca--CCUgCUCCGGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 50719 | 0.69 | 0.579777 |
Target: 5'- gGGUCUgcGUGG-GGACGAGGCCc-- -3' miRNA: 3'- aCCGGAgcUACCaCCUGCUCCGGcaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 52233 | 0.71 | 0.437607 |
Target: 5'- gUGGCuCUCGGUGGUcGugGGGGCgCGc- -3' miRNA: 3'- -ACCG-GAGCUACCAcCugCUCCG-GCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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