miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 5' -59.8 NC_001798.1 + 11592 0.68 0.639889
Target:  5'- cUGGCCgaUCGcGUGGaauUGGGCGGGGCUa-- -3'
miRNA:   3'- -ACCGG--AGC-UACC---ACCUGCUCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 5916 0.68 0.629842
Target:  5'- gGGCC-CGGacgGG-GGGCG-GGCCGUUc -3'
miRNA:   3'- aCCGGaGCUa--CCaCCUGCuCCGGCAA- -5'
5521 5' -59.8 NC_001798.1 + 63522 0.68 0.619797
Target:  5'- cGGCCUCGucgcGGcuGAUGAGGUCGUUc -3'
miRNA:   3'- aCCGGAGCua--CCacCUGCUCCGGCAA- -5'
5521 5' -59.8 NC_001798.1 + 102014 0.68 0.618793
Target:  5'- cGGCCUUggcgggguagcggGGUGGuUGGGCGGGGgucuCCGUg -3'
miRNA:   3'- aCCGGAG-------------CUACC-ACCUGCUCC----GGCAa -5'
5521 5' -59.8 NC_001798.1 + 140508 0.68 0.609761
Target:  5'- cGGCCaaccuucCGG-GGUGGACGcGGCUGUUc -3'
miRNA:   3'- aCCGGa------GCUaCCACCUGCuCCGGCAA- -5'
5521 5' -59.8 NC_001798.1 + 108824 0.68 0.589745
Target:  5'- cGGCCUCGAcgUGGcccgugggcgucUGGACGAcgggcgGGCUGg- -3'
miRNA:   3'- aCCGGAGCU--ACC------------ACCUGCU------CCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 50719 0.69 0.579777
Target:  5'- gGGUCUgcGUGG-GGACGAGGCCc-- -3'
miRNA:   3'- aCCGGAgcUACCaCCUGCUCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 22882 0.69 0.579777
Target:  5'- cGGCC-CGGguucgGGUGGcACGguGGGCCGg- -3'
miRNA:   3'- aCCGGaGCUa----CCACC-UGC--UCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 95311 0.69 0.579777
Target:  5'- cGGCgUCGAgucucGG-GGGCGGGGCCc-- -3'
miRNA:   3'- aCCGgAGCUa----CCaCCUGCUCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 11673 0.69 0.540331
Target:  5'- gGGUCUCGggGGgaGGACGGGGgUGUc -3'
miRNA:   3'- aCCGGAGCuaCCa-CCUGCUCCgGCAa -5'
5521 5' -59.8 NC_001798.1 + 73926 0.69 0.540331
Target:  5'- aGGCCaUCGAgggaugucUGGUGGAgGGGGgCGa- -3'
miRNA:   3'- aCCGG-AGCU--------ACCACCUgCUCCgGCaa -5'
5521 5' -59.8 NC_001798.1 + 39870 0.69 0.539355
Target:  5'- aGGCUUCGggGGUgccggcguccucgGGGCG-GGCCGg- -3'
miRNA:   3'- aCCGGAGCuaCCA-------------CCUGCuCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 24551 0.69 0.530603
Target:  5'- gGcGCCggCGGUGGUGG-CGGcGGCCGg- -3'
miRNA:   3'- aC-CGGa-GCUACCACCuGCU-CCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 8782 0.7 0.520941
Target:  5'- aGGCUUCuGccGGgacGGGCGAGGCCGc- -3'
miRNA:   3'- aCCGGAG-CuaCCa--CCUGCUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 36847 0.7 0.492388
Target:  5'- cGGCUgugUGGUGgGUGGGgGAGGCaCGUUg -3'
miRNA:   3'- aCCGGa--GCUAC-CACCUgCUCCG-GCAA- -5'
5521 5' -59.8 NC_001798.1 + 77196 0.7 0.49051
Target:  5'- cGGCaagucccgcggCGAcGGUGGACGcGGCCGUg -3'
miRNA:   3'- aCCGga---------GCUaCCACCUGCuCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 85280 0.7 0.473758
Target:  5'- aGGCUUCGG-GG-GGGCgGGGGCCGg- -3'
miRNA:   3'- aCCGGAGCUaCCaCCUG-CUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 4378 0.71 0.455489
Target:  5'- cGGCggCGGUGGUGGugGuGGUgGUg -3'
miRNA:   3'- aCCGgaGCUACCACCugCuCCGgCAa -5'
5521 5' -59.8 NC_001798.1 + 39539 0.71 0.446499
Target:  5'- cGcGCCUCGccgugGGUGGcgcCGGGGCCGUc -3'
miRNA:   3'- aC-CGGAGCua---CCACCu--GCUCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 52233 0.71 0.437607
Target:  5'- gUGGCuCUCGGUGGUcGugGGGGCgCGc- -3'
miRNA:   3'- -ACCG-GAGCUACCAcCugCUCCG-GCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.