miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 3' -62.1 NC_001798.1 + 23126 1.07 0.001178
Target:  5'- gCCUUCUCCGCCGCGGACCCCCUCCAUg -3'
miRNA:   3'- -GGAAGAGGCGGCGCCUGGGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 130030 0.75 0.210048
Target:  5'- aCCggCUCCcCCGCGGACcuuggcgcauaCCCCUCCAc -3'
miRNA:   3'- -GGaaGAGGcGGCGCCUG-----------GGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 3821 0.74 0.253047
Target:  5'- gCCUcCUCCGCCuCGGGCgCCCC-CCAg -3'
miRNA:   3'- -GGAaGAGGCGGcGCCUG-GGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 4914 0.74 0.258905
Target:  5'- gCCggucgUCUCCGCCGCGGcccggagacguCCCCCgUCCu- -3'
miRNA:   3'- -GGa----AGAGGCGGCGCCu----------GGGGG-AGGua -5'
5522 3' -62.1 NC_001798.1 + 24947 0.73 0.289858
Target:  5'- gCCgcg-CCGCCGCGGACCUgcuCUUCCAg -3'
miRNA:   3'- -GGaagaGGCGGCGCCUGGG---GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 20005 0.72 0.316655
Target:  5'- -gUUCUCCcggccgGCCGgGGAgggccCCCCCUCCGUg -3'
miRNA:   3'- ggAAGAGG------CGGCgCCU-----GGGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 79975 0.72 0.316655
Target:  5'- gCCgcgUCCGCCGcCGGGCCCCCgggggucCCAg -3'
miRNA:   3'- -GGaagAGGCGGC-GCCUGGGGGa------GGUa -5'
5522 3' -62.1 NC_001798.1 + 56574 0.72 0.316655
Target:  5'- aCCUUCUCCGCCGgcgaGGAgucguCCCCCaggaaCCAg -3'
miRNA:   3'- -GGAAGAGGCGGCg---CCU-----GGGGGa----GGUa -5'
5522 3' -62.1 NC_001798.1 + 145601 0.72 0.337951
Target:  5'- uCCUUCcCCGCCGCGaccccGACCCCgCcCCAc -3'
miRNA:   3'- -GGAAGaGGCGGCGC-----CUGGGG-GaGGUa -5'
5522 3' -62.1 NC_001798.1 + 86995 0.71 0.345278
Target:  5'- gCUUCUUCGCCGCccucgcccaGACgCCCUCCGa -3'
miRNA:   3'- gGAAGAGGCGGCGc--------CUGgGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 81130 0.71 0.367934
Target:  5'- cCCUUCUUCG-CGCGGGCCaUCCUCgGg -3'
miRNA:   3'- -GGAAGAGGCgGCGCCUGG-GGGAGgUa -5'
5522 3' -62.1 NC_001798.1 + 117447 0.71 0.383596
Target:  5'- ---cCUCgGCCGCgGGGCCCCC-CCGc -3'
miRNA:   3'- ggaaGAGgCGGCG-CCUGGGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 86095 0.71 0.383596
Target:  5'- cCCggcugCgcgCCGCCGCGGACgCCCgCCGc -3'
miRNA:   3'- -GGaa---Ga--GGCGGCGCCUGgGGGaGGUa -5'
5522 3' -62.1 NC_001798.1 + 34823 0.7 0.407904
Target:  5'- cCCgcgCUCCGCCGgGGGCCCgggCCGg -3'
miRNA:   3'- -GGaa-GAGGCGGCgCCUGGGggaGGUa -5'
5522 3' -62.1 NC_001798.1 + 80939 0.7 0.407904
Target:  5'- gCCcUCU-CGCCGaCGGGCCCCCgugCCu- -3'
miRNA:   3'- -GGaAGAgGCGGC-GCCUGGGGGa--GGua -5'
5522 3' -62.1 NC_001798.1 + 86473 0.7 0.416218
Target:  5'- gCCUgCUUCggGCCGCGGGCCCCgaggCCAUc -3'
miRNA:   3'- -GGAaGAGG--CGGCGCCUGGGGga--GGUA- -5'
5522 3' -62.1 NC_001798.1 + 28810 0.7 0.416218
Target:  5'- uCCUcCgCCGCCGCGGGCCCgggCCGUc -3'
miRNA:   3'- -GGAaGaGGCGGCGCCUGGGggaGGUA- -5'
5522 3' -62.1 NC_001798.1 + 31466 0.7 0.423788
Target:  5'- gCCgUCUCCGCgccgcccCGCGGGCCCCgggCCGc -3'
miRNA:   3'- -GGaAGAGGCG-------GCGCCUGGGGga-GGUa -5'
5522 3' -62.1 NC_001798.1 + 154475 0.7 0.424634
Target:  5'- gCCggccgCUCCcCCGCGGGCgccgCCCCUCCc- -3'
miRNA:   3'- -GGaa---GAGGcGGCGCCUG----GGGGAGGua -5'
5522 3' -62.1 NC_001798.1 + 137 0.7 0.424634
Target:  5'- gCCggccgCUCCcCCGCGGGCgccgCCCCUCCc- -3'
miRNA:   3'- -GGaa---GAGGcGGCGCCUG----GGGGAGGua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.