miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 3' -62.1 NC_001798.1 + 113581 0.67 0.600162
Target:  5'- gCCagCUgCUGCCccgcaCGGAUCCCCUCCGc -3'
miRNA:   3'- -GGaaGA-GGCGGc----GCCUGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 73233 0.67 0.590415
Target:  5'- gCCUUCcgCCGgcCCGgGGGCCCCCggggaCCu- -3'
miRNA:   3'- -GGAAGa-GGC--GGCgCCUGGGGGa----GGua -5'
5522 3' -62.1 NC_001798.1 + 76317 0.67 0.580696
Target:  5'- gCCaUC-CUGCUGCgGGACCUgCUCCAg -3'
miRNA:   3'- -GGaAGaGGCGGCG-CCUGGGgGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 7170 0.67 0.580696
Target:  5'- ---cUUCCGaCCGaCGGGCCCCCgcaCCGg -3'
miRNA:   3'- ggaaGAGGC-GGC-GCCUGGGGGa--GGUa -5'
5522 3' -62.1 NC_001798.1 + 86884 0.67 0.561365
Target:  5'- gCUUUUCCGCCGCcgGGAaCCCCggCGUg -3'
miRNA:   3'- gGAAGAGGCGGCG--CCUgGGGGagGUA- -5'
5522 3' -62.1 NC_001798.1 + 16446 0.67 0.561365
Target:  5'- --cUCgCCGCCGC-GACaCCCUCCAUa -3'
miRNA:   3'- ggaAGaGGCGGCGcCUGgGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 29813 0.68 0.551764
Target:  5'- cCCgagCggCCGCCGCGGcagACCCCCggCAc -3'
miRNA:   3'- -GGaa-Ga-GGCGGCGCC---UGGGGGagGUa -5'
5522 3' -62.1 NC_001798.1 + 74418 0.68 0.542214
Target:  5'- aCCUga-CCGCCGCGG-CCCugcaCCUCUAc -3'
miRNA:   3'- -GGAagaGGCGGCGCCuGGG----GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 80676 0.68 0.532719
Target:  5'- aCCUggUUCUgGCCGCGGugCUCCUCgGc -3'
miRNA:   3'- -GGAa-GAGG-CGGCGCCugGGGGAGgUa -5'
5522 3' -62.1 NC_001798.1 + 145420 0.68 0.523284
Target:  5'- cCCgg--CCGCCGCGcGCCCCCgcCCGg -3'
miRNA:   3'- -GGaagaGGCGGCGCcUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 145462 0.68 0.523284
Target:  5'- cCCgg--CCGCCGCGcGCCCCCgcCCGg -3'
miRNA:   3'- -GGaagaGGCGGCGCcUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 145504 0.68 0.523284
Target:  5'- cCCgg--CCGCCGCGcGCCCCCgcCCGg -3'
miRNA:   3'- -GGaagaGGCGGCGCcUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 21711 0.68 0.513915
Target:  5'- cCCggUCUCCGCCGCGcagccgguGugCCCCUg--- -3'
miRNA:   3'- -GGa-AGAGGCGGCGC--------CugGGGGAggua -5'
5522 3' -62.1 NC_001798.1 + 61804 0.68 0.513915
Target:  5'- gCCUUUUCCaacaugcgccGCCGCGGGCaCgCCUUCGc -3'
miRNA:   3'- -GGAAGAGG----------CGGCGCCUG-GgGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 58331 0.68 0.505541
Target:  5'- cCCg---CCGCCGCGuGGCCCCCgacaaacaccuggggCCAc -3'
miRNA:   3'- -GGaagaGGCGGCGC-CUGGGGGa--------------GGUa -5'
5522 3' -62.1 NC_001798.1 + 137911 0.69 0.486237
Target:  5'- uCCgcCUCCGCCGgGcGGCCCgcgCCUCCc- -3'
miRNA:   3'- -GGaaGAGGCGGCgC-CUGGG---GGAGGua -5'
5522 3' -62.1 NC_001798.1 + 59819 0.69 0.477168
Target:  5'- gCCUUCUUcuucuggggCGCCGCGGucGCCCgCgUCCGg -3'
miRNA:   3'- -GGAAGAG---------GCGGCGCC--UGGG-GgAGGUa -5'
5522 3' -62.1 NC_001798.1 + 47899 0.69 0.468184
Target:  5'- ---cCUCC-CCGCGGACCCCCa---- -3'
miRNA:   3'- ggaaGAGGcGGCGCCUGGGGGaggua -5'
5522 3' -62.1 NC_001798.1 + 127689 0.69 0.468184
Target:  5'- --cUCUCUGUCGUgaGGAUCCCUUCCGc -3'
miRNA:   3'- ggaAGAGGCGGCG--CCUGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 48825 0.7 0.439173
Target:  5'- cCUUUUUCUGUCGCGGGucccggaucccuccCCCCCUCUc- -3'
miRNA:   3'- -GGAAGAGGCGGCGCCU--------------GGGGGAGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.