miRNA display CGI


Results 41 - 60 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 3' -62.1 NC_001798.1 + 105178 0.66 0.6657
Target:  5'- aCCUccaUCUCCGCggcggcggggccCGCGGugggcgacggcgcuGCCCCgUCCGc -3'
miRNA:   3'- -GGA---AGAGGCG------------GCGCC--------------UGGGGgAGGUa -5'
5522 3' -62.1 NC_001798.1 + 35171 0.66 0.66765
Target:  5'- uCCUUCUCCGgaguCCcucucgaucggcgGCGGGCCCCUgcgUUCGUu -3'
miRNA:   3'- -GGAAGAGGC----GG-------------CGCCUGGGGG---AGGUA- -5'
5522 3' -62.1 NC_001798.1 + 47991 0.66 0.668624
Target:  5'- gCCgaCUCCGCCGUGcuccuagacGCCCCCgcucCCAc -3'
miRNA:   3'- -GGaaGAGGCGGCGCc--------UGGGGGa---GGUa -5'
5522 3' -62.1 NC_001798.1 + 34868 0.66 0.675439
Target:  5'- gCCUUCcgcCCGgCGCcgggcggcuacccgGGACCCCCggCCGg -3'
miRNA:   3'- -GGAAGa--GGCgGCG--------------CCUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 48147 0.66 0.678354
Target:  5'- gUCUUCUgCGCCGCGGucggGCgCCUggcggCCAc -3'
miRNA:   3'- -GGAAGAgGCGGCGCC----UGgGGGa----GGUa -5'
5522 3' -62.1 NC_001798.1 + 84198 0.66 0.629507
Target:  5'- gUCUgCUCCGCCGUGaucgcGCCCCCcggggcgCCGUg -3'
miRNA:   3'- -GGAaGAGGCGGCGCc----UGGGGGa------GGUA- -5'
5522 3' -62.1 NC_001798.1 + 39490 0.66 0.619715
Target:  5'- gCCUcg-UgGCCGCGGGCCCCCggagaCGUc -3'
miRNA:   3'- -GGAagaGgCGGCGCCUGGGGGag---GUA- -5'
5522 3' -62.1 NC_001798.1 + 80676 0.68 0.532719
Target:  5'- aCCUggUUCUgGCCGCGGugCUCCUCgGc -3'
miRNA:   3'- -GGAa-GAGG-CGGCGCCugGGGGAGgUa -5'
5522 3' -62.1 NC_001798.1 + 74418 0.68 0.542214
Target:  5'- aCCUga-CCGCCGCGG-CCCugcaCCUCUAc -3'
miRNA:   3'- -GGAagaGGCGGCGCCuGGG----GGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 29813 0.68 0.551764
Target:  5'- cCCgagCggCCGCCGCGGcagACCCCCggCAc -3'
miRNA:   3'- -GGaa-Ga-GGCGGCGCC---UGGGGGagGUa -5'
5522 3' -62.1 NC_001798.1 + 16446 0.67 0.561365
Target:  5'- --cUCgCCGCCGC-GACaCCCUCCAUa -3'
miRNA:   3'- ggaAGaGGCGGCGcCUGgGGGAGGUA- -5'
5522 3' -62.1 NC_001798.1 + 86884 0.67 0.561365
Target:  5'- gCUUUUCCGCCGCcgGGAaCCCCggCGUg -3'
miRNA:   3'- gGAAGAGGCGGCG--CCUgGGGGagGUA- -5'
5522 3' -62.1 NC_001798.1 + 7170 0.67 0.580696
Target:  5'- ---cUUCCGaCCGaCGGGCCCCCgcaCCGg -3'
miRNA:   3'- ggaaGAGGC-GGC-GCCUGGGGGa--GGUa -5'
5522 3' -62.1 NC_001798.1 + 76317 0.67 0.580696
Target:  5'- gCCaUC-CUGCUGCgGGACCUgCUCCAg -3'
miRNA:   3'- -GGaAGaGGCGGCG-CCUGGGgGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 73233 0.67 0.590415
Target:  5'- gCCUUCcgCCGgcCCGgGGGCCCCCggggaCCu- -3'
miRNA:   3'- -GGAAGa-GGC--GGCgCCUGGGGGa----GGua -5'
5522 3' -62.1 NC_001798.1 + 113581 0.67 0.600162
Target:  5'- gCCagCUgCUGCCccgcaCGGAUCCCCUCCGc -3'
miRNA:   3'- -GGaaGA-GGCGGc----GCCUGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 28232 0.67 0.609931
Target:  5'- gCCUg--CCGCCGCcuGCCCCCcgCCGc -3'
miRNA:   3'- -GGAagaGGCGGCGccUGGGGGa-GGUa -5'
5522 3' -62.1 NC_001798.1 + 48101 0.67 0.609931
Target:  5'- cCCcaCggCGCCGUGGACCCCCcggguggCCGg -3'
miRNA:   3'- -GGaaGagGCGGCGCCUGGGGGa------GGUa -5'
5522 3' -62.1 NC_001798.1 + 21660 0.66 0.619715
Target:  5'- gCCggcgUCUCugucuCGCUGUGG-CCCCCUUCGc -3'
miRNA:   3'- -GGa---AGAG-----GCGGCGCCuGGGGGAGGUa -5'
5522 3' -62.1 NC_001798.1 + 29008 0.66 0.619715
Target:  5'- aCCgcgCgCCGCCgcGCGGGCCCggaCUCCGc -3'
miRNA:   3'- -GGaa-GaGGCGG--CGCCUGGGg--GAGGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.