Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5522 | 5' | -53.5 | NC_001798.1 | + | 22199 | 0.79 | 0.36071 |
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Target: 5'- ---aGGGCAGGGGAGCGagcccgcccGCGACGAgGg -3' miRNA: 3'- aauaCCCGUCCUCUUGC---------UGCUGCUgC- -5' |
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| 5522 | 5' | -53.5 | NC_001798.1 | + | 22903 | 0.81 | 0.293104 |
|
Target: 5'- -gGUGGGCcggAGGAGAACGAagacgaggcCGACGACGc -3' miRNA: 3'- aaUACCCG---UCCUCUUGCU---------GCUGCUGC- -5' |
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| 5522 | 5' | -53.5 | NC_001798.1 | + | 122828 | 0.81 | 0.293104 |
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Target: 5'- ---aGGGCGGucGGGGGCGGCGGCGGCGg -3' miRNA: 3'- aauaCCCGUC--CUCUUGCUGCUGCUGC- -5' |
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| 5522 | 5' | -53.5 | NC_001798.1 | + | 26605 | 0.85 | 0.161356 |
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Target: 5'- ---cGGaGCuGGAGGACGACGACGACGg -3' miRNA: 3'- aauaCC-CGuCCUCUUGCUGCUGCUGC- -5' |
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| 5522 | 5' | -53.5 | NC_001798.1 | + | 75129 | 0.86 | 0.145424 |
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Target: 5'- ---cGGGCAGGGcGGCGGCGACGACGg -3' miRNA: 3'- aauaCCCGUCCUcUUGCUGCUGCUGC- -5' |
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| 5522 | 5' | -53.5 | NC_001798.1 | + | 23161 | 0.87 | 0.124208 |
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Target: 5'- aUUAUGGcG-AGGAGAACGACGACGACGa -3' miRNA: 3'- -AAUACC-CgUCCUCUUGCUGCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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