Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5522 | 5' | -53.5 | NC_001798.1 | + | 35430 | 0.68 | 0.929831 |
Target: 5'- -aAUGcGGCGGGAG-GCGugGGCcgcuGGCGc -3' miRNA: 3'- aaUAC-CCGUCCUCuUGCugCUG----CUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 50397 | 0.68 | 0.912905 |
Target: 5'- ---gGGGUAGGAuguGCGACcgGGCGGCGc -3' miRNA: 3'- aauaCCCGUCCUcu-UGCUG--CUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 39604 | 0.68 | 0.906772 |
Target: 5'- gUUGUGGGCGuuucuGGAGAcGCGcCGGCGGgGu -3' miRNA: 3'- -AAUACCCGU-----CCUCU-UGCuGCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 2750 | 0.68 | 0.906772 |
Target: 5'- --cUGGaagaGCAGGuccGCGGCGGCGGCGg -3' miRNA: 3'- aauACC----CGUCCucuUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 31360 | 0.68 | 0.900396 |
Target: 5'- ---cGcGGCGGGuGGGCGaagacgccGCGGCGGCGg -3' miRNA: 3'- aauaC-CCGUCCuCUUGC--------UGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 26327 | 0.68 | 0.900396 |
Target: 5'- -cGUGGcGCuGGGGcGCGACGccgugcGCGGCGg -3' miRNA: 3'- aaUACC-CGuCCUCuUGCUGC------UGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 141556 | 0.68 | 0.898436 |
Target: 5'- ---cGGGUguucgcguucgcggAGGAGcuGCGGCGGCGGCa -3' miRNA: 3'- aauaCCCG--------------UCCUCu-UGCUGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 36279 | 0.67 | 0.944538 |
Target: 5'- -gGUGGGCGGcGGGGGgGGgugccgugggugUGGCGGCGg -3' miRNA: 3'- aaUACCCGUC-CUCUUgCU------------GCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 102039 | 0.67 | 0.944538 |
Target: 5'- --uUGGGCGGGGGucuccgugucuGCGugGGgGugGu -3' miRNA: 3'- aauACCCGUCCUCu----------UGCugCUgCugC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 144557 | 0.67 | 0.944538 |
Target: 5'- -cGUGGGgGGGcguucgaaAGGGCGAgGACGgGCGg -3' miRNA: 3'- aaUACCCgUCC--------UCUUGCUgCUGC-UGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 24320 | 0.67 | 0.944538 |
Target: 5'- ---gGGGCGcGAacccccGACGACGGCGGCGa -3' miRNA: 3'- aauaCCCGUcCUc-----UUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 67704 | 0.67 | 0.948953 |
Target: 5'- ---cGGGCccguGGGAG-GCGGgGugGGCGg -3' miRNA: 3'- aauaCCCG----UCCUCuUGCUgCugCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 27027 | 0.67 | 0.944538 |
Target: 5'- ---cGGGCGGGGGucgGGCGgGCGGCa -3' miRNA: 3'- aauaCCCGUCCUCuugCUGC-UGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 23943 | 0.67 | 0.944538 |
Target: 5'- gUGUGGGCGccGAGcugGGCGACG-CGGCGc -3' miRNA: 3'- aAUACCCGUc-CUC---UUGCUGCuGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 11156 | 0.67 | 0.944083 |
Target: 5'- ---gGGGgGGGGGAaauaaccACGAUGGgGGCGg -3' miRNA: 3'- aauaCCCgUCCUCU-------UGCUGCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 81406 | 0.67 | 0.940358 |
Target: 5'- aUGUGGGCcuggauccacggccuGGAGGAgcuggcgucCGACGACGcCGg -3' miRNA: 3'- aAUACCCGu--------------CCUCUU---------GCUGCUGCuGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 97548 | 0.67 | 0.939881 |
Target: 5'- -cGUGGcGCGGGGacgcccgcGAGCGAgGACGGgGa -3' miRNA: 3'- aaUACC-CGUCCU--------CUUGCUgCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 43218 | 0.67 | 0.939881 |
Target: 5'- ---cGGGCAGGGGggUuugGAcCGACG-CGu -3' miRNA: 3'- aauaCCCGUCCUCuuG---CU-GCUGCuGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6247 | 0.67 | 0.934979 |
Target: 5'- ---cGGGCGGG-GGACGGgGG-GACGg -3' miRNA: 3'- aauaCCCGUCCuCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 148047 | 0.67 | 0.939881 |
Target: 5'- ---cGGGCGGGGGggUGGugguaGugGugGc -3' miRNA: 3'- aauaCCCGUCCUCuuGCUg----CugCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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