Results 101 - 120 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5522 | 5' | -53.5 | NC_001798.1 | + | 102039 | 0.67 | 0.944538 |
Target: 5'- --uUGGGCGGGGGucuccgugucuGCGugGGgGugGu -3' miRNA: 3'- aauACCCGUCCUCu----------UGCugCUgCugC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6247 | 0.67 | 0.934979 |
Target: 5'- ---cGGGCGGG-GGACGGgGG-GACGg -3' miRNA: 3'- aauaCCCGUCCuCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6402 | 0.67 | 0.934979 |
Target: 5'- ---gGGGcCGGGGGGACGGgGG-GACGg -3' miRNA: 3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6426 | 0.67 | 0.934979 |
Target: 5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3' miRNA: 3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 144557 | 0.67 | 0.944538 |
Target: 5'- -cGUGGGgGGGcguucgaaAGGGCGAgGACGgGCGg -3' miRNA: 3'- aaUACCCgUCC--------UCUUGCUgCUGC-UGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6474 | 0.67 | 0.934979 |
Target: 5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3' miRNA: 3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6498 | 0.67 | 0.934979 |
Target: 5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3' miRNA: 3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 6606 | 0.67 | 0.934979 |
Target: 5'- ---nGGGcCGGGGGGACGGgGG-GACGg -3' miRNA: 3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 91808 | 0.67 | 0.939881 |
Target: 5'- ---gGGGCGuGGGGAcCGugGGCGGgGc -3' miRNA: 3'- aauaCCCGU-CCUCUuGCugCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 148047 | 0.67 | 0.939881 |
Target: 5'- ---cGGGCGGGGGggUGGugguaGugGugGc -3' miRNA: 3'- aauaCCCGUCCUCuuGCUg----CugCugC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 73943 | 0.66 | 0.96751 |
Target: 5'- --cUGGuGgAGGGGGGCGA-GugGACGc -3' miRNA: 3'- aauACC-CgUCCUCUUGCUgCugCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 122233 | 0.66 | 0.96751 |
Target: 5'- ---cGGGUGGGAagcucuGGcCGGCGGCGACc -3' miRNA: 3'- aauaCCCGUCCU------CUuGCUGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 143707 | 0.66 | 0.96751 |
Target: 5'- ---cGGGacuuGGAGAGgGGCGACGGg- -3' miRNA: 3'- aauaCCCgu--CCUCUUgCUGCUGCUgc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 81079 | 0.66 | 0.96996 |
Target: 5'- uUUGUGGcuaccGCGGGGGAcguucucGCGGCGAgcgccgcCGACGc -3' miRNA: 3'- -AAUACC-----CGUCCUCU-------UGCUGCU-------GCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 64738 | 0.66 | 0.964252 |
Target: 5'- -gGUGGGCAuGAGcGCGAUGAacUGGCu -3' miRNA: 3'- aaUACCCGUcCUCuUGCUGCU--GCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 2538 | 0.66 | 0.964252 |
Target: 5'- ---gGGGCGGGGGGcGCGGCccccgcgggaggGGCGGCc -3' miRNA: 3'- aauaCCCGUCCUCU-UGCUG------------CUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 84403 | 0.66 | 0.964252 |
Target: 5'- ---aGGGCGGGuuGGAUGGCGAguaggggccCGACu -3' miRNA: 3'- aauaCCCGUCCu-CUUGCUGCU---------GCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 52504 | 0.66 | 0.960773 |
Target: 5'- ---cGGcGCAGGG--ACGACG-CGGCGg -3' miRNA: 3'- aauaCC-CGUCCUcuUGCUGCuGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 85814 | 0.66 | 0.960773 |
Target: 5'- ---gGGGCgaugacggGGGGGGGCGGgGGCGgGCGg -3' miRNA: 3'- aauaCCCG--------UCCUCUUGCUgCUGC-UGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 111183 | 0.66 | 0.957067 |
Target: 5'- --uUGGGCGGGAGGAgGuCGAacaUGAgGa -3' miRNA: 3'- aauACCCGUCCUCUUgCuGCU---GCUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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