Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5522 | 5' | -53.5 | NC_001798.1 | + | 33390 | 0.7 | 0.832755 |
Target: 5'- -gGUGGGCAGGAGuGgGAgGGCGcCu -3' miRNA: 3'- aaUACCCGUCCUCuUgCUgCUGCuGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 32904 | 0.7 | 0.832755 |
Target: 5'- ---gGGGCAGGGGGAgGugGGgGGgGg -3' miRNA: 3'- aauaCCCGUCCUCUUgCugCUgCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 95365 | 0.7 | 0.831908 |
Target: 5'- ---gGGGCAucauugcGGAGGGCGG-GGCGGCGg -3' miRNA: 3'- aauaCCCGU-------CCUCUUGCUgCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 18026 | 0.7 | 0.824205 |
Target: 5'- ---cGGGCAGGGGGGCGGcCGAaaccaugGACa -3' miRNA: 3'- aauaCCCGUCCUCUUGCU-GCUg------CUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 148398 | 0.71 | 0.806571 |
Target: 5'- ---cGGGCAGGugugcGGGCGGgGugGGCGc -3' miRNA: 3'- aauaCCCGUCCu----CUUGCUgCugCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 146099 | 0.71 | 0.785491 |
Target: 5'- ---cGGGCGGGcGAAggaaggggggguggUGGCGGCGGCGg -3' miRNA: 3'- aauaCCCGUCCuCUU--------------GCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 142834 | 0.71 | 0.77892 |
Target: 5'- ---aGGGUAGGGGGAaaagaaaGGgGACGGCGg -3' miRNA: 3'- aauaCCCGUCCUCUUg------CUgCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 69646 | 0.71 | 0.77892 |
Target: 5'- gUUGUGGG-GGGGGGugGugGAgGugGg -3' miRNA: 3'- -AAUACCCgUCCUCUugCugCUgCugC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 99618 | 0.71 | 0.77892 |
Target: 5'- ---aGuGGCAGGAGGugGACGA-GAUGc -3' miRNA: 3'- aauaC-CCGUCCUCUugCUGCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 152044 | 0.71 | 0.77892 |
Target: 5'- ---aGGGUcGGGGGGCGGCGcACGGCc -3' miRNA: 3'- aauaCCCGuCCUCUUGCUGC-UGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 51056 | 0.71 | 0.77892 |
Target: 5'- ---cGGGCGGuGuuuAACGugGACGACGa -3' miRNA: 3'- aauaCCCGUC-Cuc-UUGCugCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 115022 | 0.72 | 0.750047 |
Target: 5'- -gAUGGGCAaggccgugcGGAGccugGACGACGugGGCc -3' miRNA: 3'- aaUACCCGU---------CCUC----UUGCUGCugCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 10280 | 0.72 | 0.740195 |
Target: 5'- ---aGGGUgcgucGGGGGGGCGACgggggGACGACGg -3' miRNA: 3'- aauaCCCG-----UCCUCUUGCUG-----CUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 15454 | 0.72 | 0.738213 |
Target: 5'- ---gGGGCGGGGGGucgcguggguaGACGugGGCGg -3' miRNA: 3'- aauaCCCGUCCUCUug---------CUGCugCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 23524 | 0.72 | 0.730246 |
Target: 5'- ---cGGGCGGGAcccucggcgcGGACGACGAggaGGCGg -3' miRNA: 3'- aauaCCCGUCCU----------CUUGCUGCUg--CUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 22285 | 0.73 | 0.710095 |
Target: 5'- -gAUGccgcGCGGGcGGAGCGGCGGCGGCGc -3' miRNA: 3'- aaUACc---CGUCC-UCUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 4302 | 0.73 | 0.699913 |
Target: 5'- ---gGaGGC-GGAGGACGcCGACGACGa -3' miRNA: 3'- aauaC-CCGuCCUCUUGCuGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 10917 | 0.73 | 0.689671 |
Target: 5'- gUcgGGGCAgaucGGAGAcuaGCuGACGGCGGCGc -3' miRNA: 3'- aAuaCCCGU----CCUCU---UG-CUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 101835 | 0.73 | 0.689671 |
Target: 5'- ---cGcGGCGGGGGGAggcguggguccCGGCGGCGGCGg -3' miRNA: 3'- aauaC-CCGUCCUCUU-----------GCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 146313 | 0.73 | 0.67938 |
Target: 5'- ---cGGGCGGGAGGAUGGCGGagaGAg- -3' miRNA: 3'- aauaCCCGUCCUCUUGCUGCUg--CUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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