Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5522 | 5' | -53.5 | NC_001798.1 | + | 79949 | 0.7 | 0.849282 |
Target: 5'- --cUGGGCuGGgcguccGGAGCGGCGGCGcCGc -3' miRNA: 3'- aauACCCGuCC------UCUUGCUGCUGCuGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 81079 | 0.66 | 0.96996 |
Target: 5'- uUUGUGGcuaccGCGGGGGAcguucucGCGGCGAgcgccgcCGACGc -3' miRNA: 3'- -AAUACC-----CGUCCUCU-------UGCUGCU-------GCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 81406 | 0.67 | 0.940358 |
Target: 5'- aUGUGGGCcuggauccacggccuGGAGGAgcuggcgucCGACGACGcCGg -3' miRNA: 3'- aAUACCCGu--------------CCUCUU---------GCUGCUGCuGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 84403 | 0.66 | 0.964252 |
Target: 5'- ---aGGGCGGGuuGGAUGGCGAguaggggccCGACu -3' miRNA: 3'- aauaCCCGUCCu-CUUGCUGCU---------GCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 85814 | 0.66 | 0.960773 |
Target: 5'- ---gGGGCgaugacggGGGGGGGCGGgGGCGgGCGg -3' miRNA: 3'- aauaCCCG--------UCCUCUUGCUgCUGC-UGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 86004 | 0.7 | 0.832755 |
Target: 5'- --cUGGcGCAGGGGggUgagccggaGACGugGGCGu -3' miRNA: 3'- aauACC-CGUCCUCuuG--------CUGCugCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 88060 | 0.69 | 0.879843 |
Target: 5'- ---gGGGCGGGcucguccccuGGGGCGGCGGCGuCu -3' miRNA: 3'- aauaCCCGUCC----------UCUUGCUGCUGCuGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 91808 | 0.67 | 0.939881 |
Target: 5'- ---gGGGCGuGGGGAcCGugGGCGGgGc -3' miRNA: 3'- aauaCCCGU-CCUCUuGCugCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 95365 | 0.7 | 0.831908 |
Target: 5'- ---gGGGCAucauugcGGAGGGCGG-GGCGGCGg -3' miRNA: 3'- aauaCCCGU-------CCUCUUGCUgCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 96034 | 0.69 | 0.886928 |
Target: 5'- ---gGGGCGGGcGGGCGgGCGACGGg- -3' miRNA: 3'- aauaCCCGUCCuCUUGC-UGCUGCUgc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 97548 | 0.67 | 0.939881 |
Target: 5'- -cGUGGcGCGGGGacgcccgcGAGCGAgGACGGgGa -3' miRNA: 3'- aaUACC-CGUCCU--------CUUGCUgCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 97607 | 0.69 | 0.864995 |
Target: 5'- ---gGGGCcGGAGAGCuGgGGCGACa -3' miRNA: 3'- aauaCCCGuCCUCUUGcUgCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 98496 | 0.68 | 0.918793 |
Target: 5'- ---cGGGCGGcGGGAGCGACG-CGcCc -3' miRNA: 3'- aauaCCCGUC-CUCUUGCUGCuGCuGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 99618 | 0.71 | 0.77892 |
Target: 5'- ---aGuGGCAGGAGGugGACGA-GAUGc -3' miRNA: 3'- aauaC-CCGUCCUCUugCUGCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 100991 | 0.68 | 0.924435 |
Target: 5'- -cGUGGGCgGGGAGGGgGAgGAaGGCGc -3' miRNA: 3'- aaUACCCG-UCCUCUUgCUgCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 101835 | 0.73 | 0.689671 |
Target: 5'- ---cGcGGCGGGGGGAggcguggguccCGGCGGCGGCGg -3' miRNA: 3'- aauaC-CCGUCCUCUU-----------GCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 101982 | 0.7 | 0.857244 |
Target: 5'- ---cGGGgGGGcGAuguGCGGCGGCGGCa -3' miRNA: 3'- aauaCCCgUCCuCU---UGCUGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 102039 | 0.67 | 0.944538 |
Target: 5'- --uUGGGCGGGGGucuccgugucuGCGugGGgGugGu -3' miRNA: 3'- aauACCCGUCCUCu----------UGCugCUgCugC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 102473 | 0.76 | 0.534963 |
Target: 5'- -gGUGGGCGGGAGGagGCGgguaguGCGGgGACGg -3' miRNA: 3'- aaUACCCGUCCUCU--UGC------UGCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 105192 | 0.69 | 0.864995 |
Target: 5'- ---gGcGGCGGGGcccgcGGugGGCGACGGCGc -3' miRNA: 3'- aauaC-CCGUCCU-----CUugCUGCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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