miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 52504 0.66 0.960773
Target:  5'- ---cGGcGCAGGG--ACGACG-CGGCGg -3'
miRNA:   3'- aauaCC-CGUCCUcuUGCUGCuGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 51056 0.71 0.77892
Target:  5'- ---cGGGCGGuGuuuAACGugGACGACGa -3'
miRNA:   3'- aauaCCCGUC-Cuc-UUGCugCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 50397 0.68 0.912905
Target:  5'- ---gGGGUAGGAuguGCGACcgGGCGGCGc -3'
miRNA:   3'- aauaCCCGUCCUcu-UGCUG--CUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 44431 0.7 0.841116
Target:  5'- ---aGGGCGucuuGGAGcACGGCGACGuCGu -3'
miRNA:   3'- aauaCCCGU----CCUCuUGCUGCUGCuGC- -5'
5522 5' -53.5 NC_001798.1 + 44305 0.74 0.606717
Target:  5'- ---cGGGCGGGGGcguUGugGACGAUGg -3'
miRNA:   3'- aauaCCCGUCCUCuu-GCugCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 43218 0.67 0.939881
Target:  5'- ---cGGGCAGGGGggUuugGAcCGACG-CGu -3'
miRNA:   3'- aauaCCCGUCCUCuuG---CU-GCUGCuGC- -5'
5522 5' -53.5 NC_001798.1 + 42191 0.68 0.928238
Target:  5'- -cAUGGGCGGGgcgugaaaguGGAagcgccgcgggucgGCGugcGCGGCGACGa -3'
miRNA:   3'- aaUACCCGUCC----------UCU--------------UGC---UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 39604 0.68 0.906772
Target:  5'- gUUGUGGGCGuuucuGGAGAcGCGcCGGCGGgGu -3'
miRNA:   3'- -AAUACCCGU-----CCUCU-UGCuGCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 36619 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36598 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36577 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36556 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36535 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36514 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36279 0.67 0.944538
Target:  5'- -gGUGGGCGGcGGGGGgGGgugccgugggugUGGCGGCGg -3'
miRNA:   3'- aaUACCCGUC-CUCUUgCU------------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 36095 0.69 0.879843
Target:  5'- -gGUGGGCGGGuGGugGGgGGgGGCc -3'
miRNA:   3'- aaUACCCGUCCuCUugCUgCUgCUGc -5'
5522 5' -53.5 NC_001798.1 + 35837 0.66 0.970551
Target:  5'- ---aGGGCcGGAGAAUGgaaGGCGAgGg -3'
miRNA:   3'- aauaCCCGuCCUCUUGCug-CUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 35430 0.68 0.929831
Target:  5'- -aAUGcGGCGGGAG-GCGugGGCcgcuGGCGc -3'
miRNA:   3'- aaUAC-CCGUCCUCuUGCugCUG----CUGC- -5'
5522 5' -53.5 NC_001798.1 + 34604 0.77 0.495282
Target:  5'- -gGUGGgacGCGGGcaaAGGGCGGCGGCGGCGg -3'
miRNA:   3'- aaUACC---CGUCC---UCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 33390 0.7 0.832755
Target:  5'- -gGUGGGCAGGAGuGgGAgGGCGcCu -3'
miRNA:   3'- aaUACCCGUCCUCuUgCUgCUGCuGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.