miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 14989 0.73 0.678348
Target:  5'- --uUGGGCGGGGGGGCGAggcguguUGGgGGCGa -3'
miRNA:   3'- aauACCCGUCCUCUUGCU-------GCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 12713 0.73 0.669048
Target:  5'- ---gGGGCGGcGGGGGCGugGuGCGGCGc -3'
miRNA:   3'- aauaCCCGUC-CUCUUGCugC-UGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 11321 0.68 0.929831
Target:  5'- ----aGGCAuGGucGugGACGACGACGa -3'
miRNA:   3'- aauacCCGU-CCucUugCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 11156 0.67 0.944083
Target:  5'- ---gGGGgGGGGGAaauaaccACGAUGGgGGCGg -3'
miRNA:   3'- aauaCCCgUCCUCU-------UGCUGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 10917 0.73 0.689671
Target:  5'- gUcgGGGCAgaucGGAGAcuaGCuGACGGCGGCGc -3'
miRNA:   3'- aAuaCCCGU----CCUCU---UG-CUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 10280 0.72 0.740195
Target:  5'- ---aGGGUgcgucGGGGGGGCGACgggggGACGACGg -3'
miRNA:   3'- aauaCCCG-----UCCUCUUGCUG-----CUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6606 0.67 0.934979
Target:  5'- ---nGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6585 0.68 0.918793
Target:  5'- ---cGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6543 0.68 0.918793
Target:  5'- ---cGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6498 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6474 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6450 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6426 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6402 0.67 0.934979
Target:  5'- ---gGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6247 0.67 0.934979
Target:  5'- ---cGGGCGGG-GGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCCGUCCuCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 5259 0.69 0.879843
Target:  5'- ---gGGGCGGGGGGAaagGAgGAgGACGc -3'
miRNA:   3'- aauaCCCGUCCUCUUg--CUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4412 0.67 0.953128
Target:  5'- ---gGGGCGccGGGGGucGCGGCGACaGGCu -3'
miRNA:   3'- aauaCCCGU--CCUCU--UGCUGCUG-CUGc -5'
5522 5' -53.5 NC_001798.1 + 4363 0.7 0.832755
Target:  5'- ----cGGCGGGGGGcGCGcCGGCGGCGg -3'
miRNA:   3'- aauacCCGUCCUCU-UGCuGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4302 0.73 0.699913
Target:  5'- ---gGaGGC-GGAGGACGcCGACGACGa -3'
miRNA:   3'- aauaC-CCGuCCUCUUGCuGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 3313 0.7 0.849282
Target:  5'- ----cGGCAacGGGGcGGCGGCGGCGGCGg -3'
miRNA:   3'- aauacCCGU--CCUC-UUGCUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.