miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 23161 0.87 0.124208
Target:  5'- aUUAUGGcG-AGGAGAACGACGACGACGa -3'
miRNA:   3'- -AAUACC-CgUCCUCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 75129 0.86 0.145424
Target:  5'- ---cGGGCAGGGcGGCGGCGACGACGg -3'
miRNA:   3'- aauaCCCGUCCUcUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 26605 0.85 0.161356
Target:  5'- ---cGGaGCuGGAGGACGACGACGACGg -3'
miRNA:   3'- aauaCC-CGuCCUCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22903 0.81 0.293104
Target:  5'- -gGUGGGCcggAGGAGAACGAagacgaggcCGACGACGc -3'
miRNA:   3'- aaUACCCG---UCCUCUUGCU---------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 122828 0.81 0.293104
Target:  5'- ---aGGGCGGucGGGGGCGGCGGCGGCGg -3'
miRNA:   3'- aauaCCCGUC--CUCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22199 0.79 0.36071
Target:  5'- ---aGGGCAGGGGAGCGagcccgcccGCGACGAgGg -3'
miRNA:   3'- aauaCCCGUCCUCUUGC---------UGCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 105613 0.78 0.420348
Target:  5'- ---gGcGGCGGGcGGGCGACGACGGCGc -3'
miRNA:   3'- aauaC-CCGUCCuCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 153073 0.77 0.466419
Target:  5'- ---gGGGCGGGcGGAGCGGCGggGCGGCGc -3'
miRNA:   3'- aauaCCCGUCC-UCUUGCUGC--UGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 128535 0.77 0.466419
Target:  5'- ---cGGGCGGGuGAACGAgcCGACGGCc -3'
miRNA:   3'- aauaCCCGUCCuCUUGCU--GCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 34604 0.77 0.495282
Target:  5'- -gGUGGgacGCGGGcaaAGGGCGGCGGCGGCGg -3'
miRNA:   3'- aaUACC---CGUCC---UCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 102473 0.76 0.534963
Target:  5'- -gGUGGGCGGGAGGagGCGgguaguGCGGgGACGg -3'
miRNA:   3'- aaUACCCGUCCUCU--UGC------UGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 154390 0.75 0.56544
Target:  5'- --uUGGGgGGGGGcgcgaaggcgGGCGGCGGCGGCGg -3'
miRNA:   3'- aauACCCgUCCUC----------UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 52 0.75 0.56544
Target:  5'- --uUGGGgGGGGGcgcgaaggcgGGCGGCGGCGGCGg -3'
miRNA:   3'- aauACCCgUCCUC----------UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 58578 0.75 0.58601
Target:  5'- aUcgGGGCGGGGGAgacucgaccGCGGaGACGACGc -3'
miRNA:   3'- aAuaCCCGUCCUCU---------UGCUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 73648 0.75 0.58601
Target:  5'- -gAUGGGCGGGGGggUucgGGCGGCGGa- -3'
miRNA:   3'- aaUACCCGUCCUCuuG---CUGCUGCUgc -5'
5522 5' -53.5 NC_001798.1 + 44305 0.74 0.606717
Target:  5'- ---cGGGCGGGGGcguUGugGACGAUGg -3'
miRNA:   3'- aauaCCCGUCCUCuu-GCugCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 28775 0.74 0.637904
Target:  5'- ---cGGaGgAGGAGGagGCGGCGGCGGCGg -3'
miRNA:   3'- aauaCC-CgUCCUCU--UGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 36619 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36514 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36556 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.