miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 52 0.75 0.56544
Target:  5'- --uUGGGgGGGGGcgcgaaggcgGGCGGCGGCGGCGg -3'
miRNA:   3'- aauACCCgUCCUC----------UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 2254 0.66 0.963915
Target:  5'- ---cGGGCGcgccgccGGGGGGCGG-GGCGGCGc -3'
miRNA:   3'- aauaCCCGU-------CCUCUUGCUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 2507 0.7 0.841116
Target:  5'- ---gGGGCGcGGcGGccGCGGCGGCGGCGu -3'
miRNA:   3'- aauaCCCGU-CCuCU--UGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 2538 0.66 0.964252
Target:  5'- ---gGGGCGGGGGGcGCGGCccccgcgggaggGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCU-UGCUG------------CUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 2686 0.69 0.864995
Target:  5'- ---cGGGCGcGGcGAGCGagucggccGCGGCGACGg -3'
miRNA:   3'- aauaCCCGU-CCuCUUGC--------UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 2750 0.68 0.906772
Target:  5'- --cUGGaagaGCAGGuccGCGGCGGCGGCGg -3'
miRNA:   3'- aauACC----CGUCCucuUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 3313 0.7 0.849282
Target:  5'- ----cGGCAacGGGGcGGCGGCGGCGGCGg -3'
miRNA:   3'- aauacCCGU--CCUC-UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4302 0.73 0.699913
Target:  5'- ---gGaGGC-GGAGGACGcCGACGACGa -3'
miRNA:   3'- aauaC-CCGuCCUCUUGCuGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4363 0.7 0.832755
Target:  5'- ----cGGCGGGGGGcGCGcCGGCGGCGg -3'
miRNA:   3'- aauacCCGUCCUCU-UGCuGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4412 0.67 0.953128
Target:  5'- ---gGGGCGccGGGGGucGCGGCGACaGGCu -3'
miRNA:   3'- aauaCCCGU--CCUCU--UGCUGCUG-CUGc -5'
5522 5' -53.5 NC_001798.1 + 5259 0.69 0.879843
Target:  5'- ---gGGGCGGGGGGAaagGAgGAgGACGc -3'
miRNA:   3'- aauaCCCGUCCUCUUg--CUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6247 0.67 0.934979
Target:  5'- ---cGGGCGGG-GGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCCGUCCuCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6402 0.67 0.934979
Target:  5'- ---gGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6426 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6450 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6474 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6498 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6543 0.68 0.918793
Target:  5'- ---cGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6585 0.68 0.918793
Target:  5'- ---cGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6606 0.67 0.934979
Target:  5'- ---nGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.