miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 23943 0.67 0.944538
Target:  5'- gUGUGGGCGccGAGcugGGCGACG-CGGCGc -3'
miRNA:   3'- aAUACCCGUc-CUC---UUGCUGCuGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 27027 0.67 0.944538
Target:  5'- ---cGGGCGGGGGucgGGCGgGCGGCa -3'
miRNA:   3'- aauaCCCGUCCUCuugCUGC-UGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36279 0.67 0.944538
Target:  5'- -gGUGGGCGGcGGGGGgGGgugccgugggugUGGCGGCGg -3'
miRNA:   3'- aaUACCCGUC-CUCUUgCU------------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 102039 0.67 0.944538
Target:  5'- --uUGGGCGGGGGucuccgugucuGCGugGGgGugGu -3'
miRNA:   3'- aauACCCGUCCUCu----------UGCugCUgCugC- -5'
5522 5' -53.5 NC_001798.1 + 144557 0.67 0.944538
Target:  5'- -cGUGGGgGGGcguucgaaAGGGCGAgGACGgGCGg -3'
miRNA:   3'- aaUACCCgUCC--------UCUUGCUgCUGC-UGC- -5'
5522 5' -53.5 NC_001798.1 + 24320 0.67 0.944538
Target:  5'- ---gGGGCGcGAacccccGACGACGGCGGCGa -3'
miRNA:   3'- aauaCCCGUcCUc-----UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 11156 0.67 0.944083
Target:  5'- ---gGGGgGGGGGAaauaaccACGAUGGgGGCGg -3'
miRNA:   3'- aauaCCCgUCCUCU-------UGCUGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 81406 0.67 0.940358
Target:  5'- aUGUGGGCcuggauccacggccuGGAGGAgcuggcgucCGACGACGcCGg -3'
miRNA:   3'- aAUACCCGu--------------CCUCUU---------GCUGCUGCuGC- -5'
5522 5' -53.5 NC_001798.1 + 91808 0.67 0.939881
Target:  5'- ---gGGGCGuGGGGAcCGugGGCGGgGc -3'
miRNA:   3'- aauaCCCGU-CCUCUuGCugCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 148047 0.67 0.939881
Target:  5'- ---cGGGCGGGGGggUGGugguaGugGugGc -3'
miRNA:   3'- aauaCCCGUCCUCuuGCUg----CugCugC- -5'
5522 5' -53.5 NC_001798.1 + 43218 0.67 0.939881
Target:  5'- ---cGGGCAGGGGggUuugGAcCGACG-CGu -3'
miRNA:   3'- aauaCCCGUCCUCuuG---CU-GCUGCuGC- -5'
5522 5' -53.5 NC_001798.1 + 97548 0.67 0.939881
Target:  5'- -cGUGGcGCGGGGacgcccgcGAGCGAgGACGGgGa -3'
miRNA:   3'- aaUACC-CGUCCU--------CUUGCUgCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 6247 0.67 0.934979
Target:  5'- ---cGGGCGGG-GGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCCGUCCuCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6402 0.67 0.934979
Target:  5'- ---gGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6426 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6450 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6474 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6498 0.67 0.934979
Target:  5'- ---gGGGaCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6606 0.67 0.934979
Target:  5'- ---nGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 141211 0.68 0.929831
Target:  5'- ---cGGGaCGGGGGcccgGACGAcuucccCGACGACGa -3'
miRNA:   3'- aauaCCC-GUCCUC----UUGCU------GCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.