miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5533 3' -51.1 NC_001806.1 + 75759 0.66 0.991752
Target:  5'- cGGUGcc-GAGUUUGACGuGGuCGAGCu -3'
miRNA:   3'- cCCACcauCUCAAACUGU-CC-GUUCGu -5'
5533 3' -51.1 NC_001806.1 + 81643 0.66 0.991752
Target:  5'- gGGGUgucGGUcgGGAGggcugUGugGGGCGaaGGCGu -3'
miRNA:   3'- -CCCA---CCA--UCUCaa---ACugUCCGU--UCGU- -5'
5533 3' -51.1 NC_001806.1 + 103435 0.66 0.99054
Target:  5'- gGGGUGGgauGAGgg-GGCGcgauGGCAcAGCGg -3'
miRNA:   3'- -CCCACCau-CUCaaaCUGU----CCGU-UCGU- -5'
5533 3' -51.1 NC_001806.1 + 37787 0.66 0.99054
Target:  5'- cGGGgccgGGgcgcgGGGGUccgcgGGCGGGgGGGCAa -3'
miRNA:   3'- -CCCa---CCa----UCUCAaa---CUGUCCgUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 151274 0.66 0.989194
Target:  5'- cGGGcGGUGGGGgccggGGCcGGgGGGCGg -3'
miRNA:   3'- -CCCaCCAUCUCaaa--CUGuCCgUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 11836 0.66 0.987062
Target:  5'- aGGG-GGUGGAGgccugguuaggGGCGGGUuGGUAu -3'
miRNA:   3'- -CCCaCCAUCUCaaa--------CUGUCCGuUCGU- -5'
5533 3' -51.1 NC_001806.1 + 55623 0.66 0.986056
Target:  5'- aGGUGGgcuugGGGGUugUUGGgGGGCuGGCc -3'
miRNA:   3'- cCCACCa----UCUCA--AACUgUCCGuUCGu -5'
5533 3' -51.1 NC_001806.1 + 69707 0.67 0.982263
Target:  5'- -cGUGGgGGAGUUUGAgAcGGcCGAGCGc -3'
miRNA:   3'- ccCACCaUCUCAAACUgU-CC-GUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 101800 0.67 0.982263
Target:  5'- aGG-GGUGGGGUUUGuGCGGGU--GCGg -3'
miRNA:   3'- cCCaCCAUCUCAAAC-UGUCCGuuCGU- -5'
5533 3' -51.1 NC_001806.1 + 88151 0.67 0.982263
Target:  5'- aGGGcGGUGGug---GACAGGUcguaGAGCAg -3'
miRNA:   3'- -CCCaCCAUCucaaaCUGUCCG----UUCGU- -5'
5533 3' -51.1 NC_001806.1 + 26293 0.67 0.977743
Target:  5'- -------cGAGUUaGACAGGCAAGCAc -3'
miRNA:   3'- cccaccauCUCAAaCUGUCCGUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 38094 0.67 0.975188
Target:  5'- uGGUcGGUGGGGgUUGG-AGGCGGGCc -3'
miRNA:   3'- cCCA-CCAUCUCaAACUgUCCGUUCGu -5'
5533 3' -51.1 NC_001806.1 + 32580 0.68 0.972425
Target:  5'- gGGGcaguUGGUGGucg--GACGGGUAAGUAa -3'
miRNA:   3'- -CCC----ACCAUCucaaaCUGUCCGUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 15403 0.7 0.926523
Target:  5'- uGGGUGGUGGAGga-GACGuuGGUggGa- -3'
miRNA:   3'- -CCCACCAUCUCaaaCUGU--CCGuuCgu -5'
5533 3' -51.1 NC_001806.1 + 29655 0.73 0.778086
Target:  5'- aGGGgggGGgagGGAGgaauaGGCGGGCGGGCGa -3'
miRNA:   3'- -CCCa--CCa--UCUCaaa--CUGUCCGUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 99641 0.78 0.517884
Target:  5'- gGGGcGGUGGcGGgccUGGCGGGCAGGCAg -3'
miRNA:   3'- -CCCaCCAUC-UCaa-ACUGUCCGUUCGU- -5'
5533 3' -51.1 NC_001806.1 + 151617 1.11 0.005594
Target:  5'- gGGGUGGUAGAGUUUGACAGGCAAGCAu -3'
miRNA:   3'- -CCCACCAUCUCAAACUGUCCGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.