miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 71540 0.66 0.992319
Target:  5'- cGGGGggGGGGGUggaaGACCAAGa- -3'
miRNA:   3'- cCCUCuuUCCCCAgacgUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 25097 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25165 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 151091 0.66 0.991188
Target:  5'- cGGGGGucgcGGGGGUCgcggggGUcGCgGGGGGc -3'
miRNA:   3'- -CCCUCuu--UCCCCAGa-----CGuUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 140444 0.66 0.992319
Target:  5'- uGGGGGggGGGcGGUUacuCGGCCcccGAGGc -3'
miRNA:   3'- -CCCUCuuUCC-CCAGac-GUUGGu--UUCC- -5'
5534 3' -51 NC_001806.1 + 57810 0.66 0.991188
Target:  5'- aGGGGGAcuGGa-UCUGCGGgCGGGGGu -3'
miRNA:   3'- -CCCUCUuuCCccAGACGUUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 25267 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 149417 0.66 0.993331
Target:  5'- -uGAGucAGGGGGUCccacgGCGACCccGGGc -3'
miRNA:   3'- ccCUCu-UUCCCCAGa----CGUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 143362 0.66 0.995036
Target:  5'- nGGAGGGacGGGGGcCgGCAgACCGAcGGc -3'
miRNA:   3'- cCCUCUU--UCCCCaGaCGU-UGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 151274 0.66 0.991188
Target:  5'- cGGGcGguGGGGG-CcGgGGCCGGGGGg -3'
miRNA:   3'- -CCCuCuuUCCCCaGaCgUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 25233 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25301 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25335 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 9136 0.66 0.991188
Target:  5'- aGGGAG--GGGGcGUC-GaCAGCCuGGAGGg -3'
miRNA:   3'- -CCCUCuuUCCC-CAGaC-GUUGG-UUUCC- -5'
5534 3' -51 NC_001806.1 + 25369 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 105462 0.66 0.992319
Target:  5'- cGGGAGAuGGGGGag-GCuAACUgaaacacgGAAGGa -3'
miRNA:   3'- -CCCUCUuUCCCCagaCG-UUGG--------UUUCC- -5'
5534 3' -51 NC_001806.1 + 25199 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 51094 0.66 0.992319
Target:  5'- uGGGAGAcGAGGGGgccgccgccCUGCGGgCGcacgugucGGGGa -3'
miRNA:   3'- -CCCUCU-UUCCCCa--------GACGUUgGU--------UUCC- -5'
5534 3' -51 NC_001806.1 + 105120 0.66 0.991188
Target:  5'- cGGGAGGAuuGGGGaCaGCuuUCGGGGGc -3'
miRNA:   3'- -CCCUCUUu-CCCCaGaCGuuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 25131 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.