miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 2860 0.73 0.841225
Target:  5'- cGGGGAGGGGGG-CgcggGCGuccgaGCCGGGGGc -3'
miRNA:   3'- cCCUCUUUCCCCaGa---CGU-----UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 4418 0.68 0.976796
Target:  5'- cGGAGAGGGGGGgugGCccGGgCGGGGGc -3'
miRNA:   3'- cCCUCUUUCCCCagaCG--UUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 5230 0.66 0.994234
Target:  5'- uGGGGGGAGGGGG-Cga-GACCcacGGa -3'
miRNA:   3'- -CCCUCUUUCCCCaGacgUUGGuuuCC- -5'
5534 3' -51 NC_001806.1 + 6459 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 6503 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 6547 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 9136 0.66 0.991188
Target:  5'- aGGGAG--GGGGcGUC-GaCAGCCuGGAGGg -3'
miRNA:   3'- -CCCUCuuUCCC-CAGaC-GUUGG-UUUCC- -5'
5534 3' -51 NC_001806.1 + 9516 0.72 0.865372
Target:  5'- aGGGAGAGucGGGUCUcuccggggggGCcAGCCAcGGGa -3'
miRNA:   3'- -CCCUCUUucCCCAGA----------CG-UUGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 10390 0.76 0.708521
Target:  5'- gGGGGGgcGGGGGgagGCGggaGCCGGGGGg -3'
miRNA:   3'- -CCCUCuuUCCCCagaCGU---UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 11794 0.67 0.989526
Target:  5'- aGGGAGcggggaugguggucGAGGGGGUggaggugGUggUCGAGGGg -3'
miRNA:   3'- -CCCUC--------------UUUCCCCAga-----CGuuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 13142 0.73 0.832765
Target:  5'- gGGGAGAGgcaggcugacGGGGGgaugcGCAGCgGGAGGg -3'
miRNA:   3'- -CCCUCUU----------UCCCCaga--CGUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 14222 0.67 0.98868
Target:  5'- gGGGGGggGGGGGgaaauuauacgacaaCUGgGuCCAuguAGGg -3'
miRNA:   3'- -CCCUCuuUCCCCa--------------GACgUuGGUu--UCC- -5'
5534 3' -51 NC_001806.1 + 17182 0.72 0.857536
Target:  5'- -cGGGAAGGcGGGUCUGUgGACCGuAGGg -3'
miRNA:   3'- ccCUCUUUC-CCCAGACG-UUGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 18305 0.74 0.768625
Target:  5'- uGGGGAcauacaAGGGGGUCgggGCGACCGGAc- -3'
miRNA:   3'- cCCUCU------UUCCCCAGa--CGUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 20625 0.66 0.994234
Target:  5'- cGGGGccGGGGGUU--CGACCAAcGGg -3'
miRNA:   3'- cCCUCuuUCCCCAGacGUUGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 20729 0.67 0.985299
Target:  5'- gGGGGGcgGGGGGcCgGCGGCCu---- -3'
miRNA:   3'- -CCCUCuuUCCCCaGaCGUUGGuuucc -5'
5534 3' -51 NC_001806.1 + 24986 0.71 0.907529
Target:  5'- aGGGGGAc-GGGGUgCUGUAACgGGccGGGa -3'
miRNA:   3'- -CCCUCUuuCCCCA-GACGUUGgUU--UCC- -5'
5534 3' -51 NC_001806.1 + 25097 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25131 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25165 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.