miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 143362 0.66 0.995036
Target:  5'- nGGAGGGacGGGGGcCgGCAgACCGAcGGc -3'
miRNA:   3'- cCCUCUU--UCCCCaGaCGU-UGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 65291 0.73 0.815273
Target:  5'- gGGGAGGagGAGGGGg--GCccCCAAGGGc -3'
miRNA:   3'- -CCCUCU--UUCCCCagaCGuuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 13142 0.73 0.832765
Target:  5'- gGGGAGAGgcaggcugacGGGGGgaugcGCAGCgGGAGGg -3'
miRNA:   3'- -CCCUCUU----------UCCCCaga--CGUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 2860 0.73 0.841225
Target:  5'- cGGGGAGGGGGG-CgcggGCGuccgaGCCGGGGGc -3'
miRNA:   3'- cCCUCUUUCCCCaGa---CGU-----UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 75530 0.73 0.849485
Target:  5'- aGGGcAGGuucGGGGGcCUGUugcacGCCGAAGGg -3'
miRNA:   3'- -CCC-UCUu--UCCCCaGACGu----UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 17182 0.72 0.857536
Target:  5'- -cGGGAAGGcGGGUCUGUgGACCGuAGGg -3'
miRNA:   3'- ccCUCUUUC-CCCAGACG-UUGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 9516 0.72 0.865372
Target:  5'- aGGGAGAGucGGGUCUcuccggggggGCcAGCCAcGGGa -3'
miRNA:   3'- -CCCUCUUucCCCAGA----------CG-UUGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 26162 0.72 0.872985
Target:  5'- gGGGAGGAgcGGGGGgaggaGCGGCCAGAc- -3'
miRNA:   3'- -CCCUCUU--UCCCCaga--CGUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 37793 0.72 0.88037
Target:  5'- cGGGGcgcGGGGGUCcGCGGgCGGGGGg -3'
miRNA:   3'- cCCUCuu-UCCCCAGaCGUUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 117068 0.74 0.787738
Target:  5'- gGGGGGguGGGGGUggGCAuCCAGGGa -3'
miRNA:   3'- -CCCUCuuUCCCCAgaCGUuGGUUUCc -5'
5534 3' -51 NC_001806.1 + 149841 0.74 0.778251
Target:  5'- cGGGGcuccauGGGGGUCguaUGCGGCUGGAGGg -3'
miRNA:   3'- cCCUCuu----UCCCCAG---ACGUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 32200 0.74 0.778251
Target:  5'- cGGGGGAcguGGGGUUgGUGugCAAAGGc -3'
miRNA:   3'- -CCCUCUuu-CCCCAGaCGUugGUUUCC- -5'
5534 3' -51 NC_001806.1 + 28741 0.79 0.541547
Target:  5'- cGGGAGAagagggaagaaGAGGGGUCgGgAuCCAAAGGa -3'
miRNA:   3'- -CCCUCU-----------UUCCCCAGaCgUuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 31370 0.77 0.645941
Target:  5'- gGGGAGggGGGGGUCggGC-GCUggGuGGu -3'
miRNA:   3'- -CCCUCuuUCCCCAGa-CGuUGGuuU-CC- -5'
5534 3' -51 NC_001806.1 + 110723 0.76 0.687831
Target:  5'- cGGGGGGGAGGaGGgagaaCUGCcGCUGGAGGa -3'
miRNA:   3'- -CCCUCUUUCC-CCa----GACGuUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 10390 0.76 0.708521
Target:  5'- gGGGGGgcGGGGGgagGCGggaGCCGGGGGg -3'
miRNA:   3'- -CCCUCuuUCCCCagaCGU---UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 18305 0.74 0.768625
Target:  5'- uGGGGAcauacaAGGGGGUCgggGCGACCGGAc- -3'
miRNA:   3'- cCCUCU------UUCCCCAGa--CGUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 34788 0.74 0.768625
Target:  5'- gGGGGGggGGGGGgggGCGggaaACCAAguAGGc -3'
miRNA:   3'- -CCCUCuuUCCCCagaCGU----UGGUU--UCC- -5'
5534 3' -51 NC_001806.1 + 59197 0.74 0.768625
Target:  5'- -cGAGGGuGGGGUUuugaugGCAGCCAGGGGa -3'
miRNA:   3'- ccCUCUUuCCCCAGa-----CGUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 66545 0.74 0.778251
Target:  5'- aGGGGGAAGucGGGGUUucgguuUGgGGCCGGGGGc -3'
miRNA:   3'- -CCCUCUUU--CCCCAG------ACgUUGGUUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.