Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5534 | 3' | -51 | NC_001806.1 | + | 25267 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 71540 | 0.66 | 0.992319 |
Target: 5'- cGGGGggGGGGGUggaaGACCAAGa- -3' miRNA: 3'- cCCUCuuUCCCCAgacgUUGGUUUcc -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 105462 | 0.66 | 0.992319 |
Target: 5'- cGGGAGAuGGGGGag-GCuAACUgaaacacgGAAGGa -3' miRNA: 3'- -CCCUCUuUCCCCagaCG-UUGG--------UUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 51094 | 0.66 | 0.992319 |
Target: 5'- uGGGAGAcGAGGGGgccgccgccCUGCGGgCGcacgugucGGGGa -3' miRNA: 3'- -CCCUCU-UUCCCCa--------GACGUUgGU--------UUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 25369 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 151091 | 0.66 | 0.991188 |
Target: 5'- cGGGGGucgcGGGGGUCgcggggGUcGCgGGGGGc -3' miRNA: 3'- -CCCUCuu--UCCCCAGa-----CGuUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 57810 | 0.66 | 0.991188 |
Target: 5'- aGGGGGAcuGGa-UCUGCGGgCGGGGGu -3' miRNA: 3'- -CCCUCUuuCCccAGACGUUgGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 9136 | 0.66 | 0.991188 |
Target: 5'- aGGGAG--GGGGcGUC-GaCAGCCuGGAGGg -3' miRNA: 3'- -CCCUCuuUCCC-CAGaC-GUUGG-UUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 105120 | 0.66 | 0.991188 |
Target: 5'- cGGGAGGAuuGGGGaCaGCuuUCGGGGGc -3' miRNA: 3'- -CCCUCUUu-CCCCaGaCGuuGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 151274 | 0.66 | 0.991188 |
Target: 5'- cGGGcGguGGGGG-CcGgGGCCGGGGGg -3' miRNA: 3'- -CCCuCuuUCCCCaGaCgUUGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 144036 | 0.67 | 0.989929 |
Target: 5'- gGGGuGuuGGGGGaggCgaggaaCAACCGAGGGg -3' miRNA: 3'- -CCCuCuuUCCCCa--Gac----GUUGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 11794 | 0.67 | 0.989526 |
Target: 5'- aGGGAGcggggaugguggucGAGGGGGUggaggugGUggUCGAGGGg -3' miRNA: 3'- -CCCUC--------------UUUCCCCAga-----CGuuGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 14222 | 0.67 | 0.98868 |
Target: 5'- gGGGGGggGGGGGgaaauuauacgacaaCUGgGuCCAuguAGGg -3' miRNA: 3'- -CCCUCuuUCCCCa--------------GACgUuGGUu--UCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 56687 | 0.67 | 0.988535 |
Target: 5'- gGGGGGAcGGGGGcCcgGgAACCccGGGu -3' miRNA: 3'- -CCCUCUuUCCCCaGa-CgUUGGuuUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 145546 | 0.67 | 0.986994 |
Target: 5'- -uGGGggGGGGGagUGCGGggGAGGGg -3' miRNA: 3'- ccCUCuuUCCCCagACGUUggUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 25531 | 0.67 | 0.986994 |
Target: 5'- gGGGAGGGcuGGGGccggggagggCUGgGGCCGggGAGGg -3' miRNA: 3'- -CCCUCUUu-CCCCa---------GACgUUGGU--UUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 83259 | 0.67 | 0.986994 |
Target: 5'- cGGGGGGgcgggcgacggAGGGGGUUcggGCgGGCgCGGAGGa -3' miRNA: 3'- -CCCUCU-----------UUCCCCAGa--CG-UUG-GUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 25579 | 0.67 | 0.986994 |
Target: 5'- gGGGAGGGcuGGGGccggggagggCUGgGGCCGggGAGGg -3' miRNA: 3'- -CCCUCUUu-CCCCa---------GACgUUGGU--UUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 20729 | 0.67 | 0.985299 |
Target: 5'- gGGGGGcgGGGGGcCgGCGGCCu---- -3' miRNA: 3'- -CCCUCuuUCCCCaGaCGUUGGuuucc -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 72646 | 0.67 | 0.983441 |
Target: 5'- cGGGGGAcGGccGGUCcgucgGCAaaACCAGAGGc -3' miRNA: 3'- -CCCUCUuUCc-CCAGa----CGU--UGGUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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