miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5535 3' -58.5 NC_001806.1 + 148575 1.1 0.001431
Target:  5'- aCCCGCUGGGCGUCACGCCCACUAUCAg -3'
miRNA:   3'- -GGGCGACCCGCAGUGCGGGUGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 29970 0.74 0.360771
Target:  5'- gCCGCgggGGGCGUCugGCCC-CUc--- -3'
miRNA:   3'- gGGCGa--CCCGCAGugCGGGuGAuagu -5'
5535 3' -58.5 NC_001806.1 + 31387 0.73 0.40957
Target:  5'- -gCGCUGGGUGgucucuggcCGCGCCCACUA-CAc -3'
miRNA:   3'- ggGCGACCCGCa--------GUGCGGGUGAUaGU- -5'
5535 3' -58.5 NC_001806.1 + 29372 0.71 0.537629
Target:  5'- aCCUGauagUGGGCGUgACGCCCAgCggGUCGu -3'
miRNA:   3'- -GGGCg---ACCCGCAgUGCGGGU-Ga-UAGU- -5'
5535 3' -58.5 NC_001806.1 + 50530 0.71 0.557164
Target:  5'- -gCGCUGGGCGacaccgcagCGCGCCgGCUGcUCGc -3'
miRNA:   3'- ggGCGACCCGCa--------GUGCGGgUGAU-AGU- -5'
5535 3' -58.5 NC_001806.1 + 146497 0.7 0.567009
Target:  5'- aCCCGCUGGuGUGUgGUGCCCG-UGUCu -3'
miRNA:   3'- -GGGCGACC-CGCAgUGCGGGUgAUAGu -5'
5535 3' -58.5 NC_001806.1 + 77444 0.7 0.576898
Target:  5'- gCCCGCgcccGGGCGUC-CGcCCCACc---- -3'
miRNA:   3'- -GGGCGa---CCCGCAGuGC-GGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 42634 0.7 0.596782
Target:  5'- gCCGCgGcGGCGUCGCGUCCGgUG-CGg -3'
miRNA:   3'- gGGCGaC-CCGCAGUGCGGGUgAUaGU- -5'
5535 3' -58.5 NC_001806.1 + 74004 0.7 0.606764
Target:  5'- cCCCGCaggGGGCucCGCGCCCACc---- -3'
miRNA:   3'- -GGGCGa--CCCGcaGUGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 25877 0.7 0.606764
Target:  5'- cCCCGC-GGGCG-CGCGCgCGCg--CAa -3'
miRNA:   3'- -GGGCGaCCCGCaGUGCGgGUGauaGU- -5'
5535 3' -58.5 NC_001806.1 + 70820 0.7 0.616765
Target:  5'- gCgCGCUGgcGGCGUCuguCgGCCUGCUAUCAa -3'
miRNA:   3'- -GgGCGAC--CCGCAGu--G-CGGGUGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 72140 0.69 0.626777
Target:  5'- gCCCG-UGGGCccUGCGCCCcCUGUCGu -3'
miRNA:   3'- -GGGCgACCCGcaGUGCGGGuGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 130707 0.69 0.626777
Target:  5'- -aCGCcacGGGCGUCAUcCCCACgAUCAa -3'
miRNA:   3'- ggGCGa--CCCGCAGUGcGGGUGaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 80026 0.69 0.636793
Target:  5'- gCCGCaGcGGCGccuuaCGCGcCCCGCUGUCGc -3'
miRNA:   3'- gGGCGaC-CCGCa----GUGC-GGGUGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 106992 0.68 0.716132
Target:  5'- aCCUGCUaGGCuuUUugGCCCACUcgCGc -3'
miRNA:   3'- -GGGCGAcCCGc-AGugCGGGUGAuaGU- -5'
5535 3' -58.5 NC_001806.1 + 20299 0.68 0.735448
Target:  5'- cCCCGCccccuugGGGCgGUCcCGCCCGCc---- -3'
miRNA:   3'- -GGGCGa------CCCG-CAGuGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 69358 0.68 0.735448
Target:  5'- -aCGCUGGGU-UCACGCCCucgcACUG-CAc -3'
miRNA:   3'- ggGCGACCCGcAGUGCGGG----UGAUaGU- -5'
5535 3' -58.5 NC_001806.1 + 63252 0.68 0.735448
Target:  5'- gCCUGCacGGCGUCGCggagccGCCCAaaGUCAa -3'
miRNA:   3'- -GGGCGacCCGCAGUG------CGGGUgaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 50217 0.68 0.735448
Target:  5'- gCUGCUGGaccgcgacugucGCGUgGcCGCCCGCUAUg- -3'
miRNA:   3'- gGGCGACC------------CGCAgU-GCGGGUGAUAgu -5'
5535 3' -58.5 NC_001806.1 + 16375 0.68 0.735448
Target:  5'- aCCCGUUGGGgGUaaucuggAUGgCUGCUGUCAa -3'
miRNA:   3'- -GGGCGACCCgCAg------UGCgGGUGAUAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.