miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5535 3' -58.5 NC_001806.1 + 1330 0.67 0.75442
Target:  5'- uCCCGCcgcggGGGCGUgGCcaaGCCCGCc---- -3'
miRNA:   3'- -GGGCGa----CCCGCAgUG---CGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 3469 0.67 0.763755
Target:  5'- gCCgGcCUGGGCGcgGCGCCCGgcGUCGu -3'
miRNA:   3'- -GGgC-GACCCGCagUGCGGGUgaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 4037 0.67 0.763755
Target:  5'- aCUGCUGcgcGGCGUCgcccagcucggGCGCCCACa---- -3'
miRNA:   3'- gGGCGAC---CCGCAG-----------UGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 16171 0.67 0.747823
Target:  5'- aCCGCUgcgaucugcGGGCGUCccaguggguucagGCGCCUACUcagauagguauacagGUCGg -3'
miRNA:   3'- gGGCGA---------CCCGCAG-------------UGCGGGUGA---------------UAGU- -5'
5535 3' -58.5 NC_001806.1 + 16375 0.68 0.735448
Target:  5'- aCCCGUUGGGgGUaaucuggAUGgCUGCUGUCAa -3'
miRNA:   3'- -GGGCGACCCgCAg------UGCgGGUGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 20299 0.68 0.735448
Target:  5'- cCCCGCccccuugGGGCgGUCcCGCCCGCc---- -3'
miRNA:   3'- -GGGCGa------CCCG-CAGuGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 22200 0.67 0.794608
Target:  5'- gCCCgaGCUGGGCGacgccgcgcagcagUACGCCCug-AUCAc -3'
miRNA:   3'- -GGG--CGACCCGCa-------------GUGCGGGugaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 22684 0.66 0.825501
Target:  5'- gCCGCccugGGGCGgcuguccgcCGCGCCCGCc---- -3'
miRNA:   3'- gGGCGa---CCCGCa--------GUGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 22772 0.67 0.763755
Target:  5'- -aCGCcGGGCGcCGCGCCCAg----- -3'
miRNA:   3'- ggGCGaCCCGCaGUGCGGGUgauagu -5'
5535 3' -58.5 NC_001806.1 + 25877 0.7 0.606764
Target:  5'- cCCCGC-GGGCG-CGCGCgCGCg--CAa -3'
miRNA:   3'- -GGGCGaCCCGCaGUGCGgGUGauaGU- -5'
5535 3' -58.5 NC_001806.1 + 29372 0.71 0.537629
Target:  5'- aCCUGauagUGGGCGUgACGCCCAgCggGUCGu -3'
miRNA:   3'- -GGGCg---ACCCGCAgUGCGGGU-Ga-UAGU- -5'
5535 3' -58.5 NC_001806.1 + 29970 0.74 0.360771
Target:  5'- gCCGCgggGGGCGUCugGCCC-CUc--- -3'
miRNA:   3'- gGGCGa--CCCGCAGugCGGGuGAuagu -5'
5535 3' -58.5 NC_001806.1 + 31387 0.73 0.40957
Target:  5'- -gCGCUGGGUGgucucuggcCGCGCCCACUA-CAc -3'
miRNA:   3'- ggGCGACCCGCa--------GUGCGGGUGAUaGU- -5'
5535 3' -58.5 NC_001806.1 + 42634 0.7 0.596782
Target:  5'- gCCGCgGcGGCGUCGCGUCCGgUG-CGg -3'
miRNA:   3'- gGGCGaC-CCGCAGUGCGGGUgAUaGU- -5'
5535 3' -58.5 NC_001806.1 + 48045 0.67 0.782082
Target:  5'- uCCCGCUGGuGCGcagCGCGgCUACg---- -3'
miRNA:   3'- -GGGCGACC-CGCa--GUGCgGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 50217 0.68 0.735448
Target:  5'- gCUGCUGGaccgcgacugucGCGUgGcCGCCCGCUAUg- -3'
miRNA:   3'- gGGCGACC------------CGCAgU-GCGGGUGAUAgu -5'
5535 3' -58.5 NC_001806.1 + 50530 0.71 0.557164
Target:  5'- -gCGCUGGGCGacaccgcagCGCGCCgGCUGcUCGc -3'
miRNA:   3'- ggGCGACCCGCa--------GUGCGGgUGAU-AGU- -5'
5535 3' -58.5 NC_001806.1 + 52482 0.66 0.799893
Target:  5'- cUCCGCaacgGGGCGcCGuCGCuCCACUAc-- -3'
miRNA:   3'- -GGGCGa---CCCGCaGU-GCG-GGUGAUagu -5'
5535 3' -58.5 NC_001806.1 + 55184 0.66 0.808585
Target:  5'- gUCGC-GGGCGUCAccuCGCCgAUaAUCAg -3'
miRNA:   3'- gGGCGaCCCGCAGU---GCGGgUGaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 63252 0.68 0.735448
Target:  5'- gCCUGCacGGCGUCGCggagccGCCCAaaGUCAa -3'
miRNA:   3'- -GGGCGacCCGCAGUG------CGGGUgaUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.