Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5535 | 3' | -58.5 | NC_001806.1 | + | 16171 | 0.67 | 0.747823 |
Target: 5'- aCCGCUgcgaucugcGGGCGUCccaguggguucagGCGCCUACUcagauagguauacagGUCGg -3' miRNA: 3'- gGGCGA---------CCCGCAG-------------UGCGGGUGA---------------UAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 20299 | 0.68 | 0.735448 |
Target: 5'- cCCCGCccccuugGGGCgGUCcCGCCCGCc---- -3' miRNA: 3'- -GGGCGa------CCCG-CAGuGCGGGUGauagu -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 69358 | 0.68 | 0.735448 |
Target: 5'- -aCGCUGGGU-UCACGCCCucgcACUG-CAc -3' miRNA: 3'- ggGCGACCCGcAGUGCGGG----UGAUaGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 63252 | 0.68 | 0.735448 |
Target: 5'- gCCUGCacGGCGUCGCggagccGCCCAaaGUCAa -3' miRNA: 3'- -GGGCGacCCGCAGUG------CGGGUgaUAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 50217 | 0.68 | 0.735448 |
Target: 5'- gCUGCUGGaccgcgacugucGCGUgGcCGCCCGCUAUg- -3' miRNA: 3'- gGGCGACC------------CGCAgU-GCGGGUGAUAgu -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 16375 | 0.68 | 0.735448 |
Target: 5'- aCCCGUUGGGgGUaaucuggAUGgCUGCUGUCAa -3' miRNA: 3'- -GGGCGACCCgCAg------UGCgGGUGAUAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 106992 | 0.68 | 0.716132 |
Target: 5'- aCCUGCUaGGCuuUUugGCCCACUcgCGc -3' miRNA: 3'- -GGGCGAcCCGc-AGugCGGGUGAuaGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 80026 | 0.69 | 0.636793 |
Target: 5'- gCCGCaGcGGCGccuuaCGCGcCCCGCUGUCGc -3' miRNA: 3'- gGGCGaC-CCGCa----GUGC-GGGUGAUAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 130707 | 0.69 | 0.626777 |
Target: 5'- -aCGCcacGGGCGUCAUcCCCACgAUCAa -3' miRNA: 3'- ggGCGa--CCCGCAGUGcGGGUGaUAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 72140 | 0.69 | 0.626777 |
Target: 5'- gCCCG-UGGGCccUGCGCCCcCUGUCGu -3' miRNA: 3'- -GGGCgACCCGcaGUGCGGGuGAUAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 70820 | 0.7 | 0.616765 |
Target: 5'- gCgCGCUGgcGGCGUCuguCgGCCUGCUAUCAa -3' miRNA: 3'- -GgGCGAC--CCGCAGu--G-CGGGUGAUAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 25877 | 0.7 | 0.606764 |
Target: 5'- cCCCGC-GGGCG-CGCGCgCGCg--CAa -3' miRNA: 3'- -GGGCGaCCCGCaGUGCGgGUGauaGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 74004 | 0.7 | 0.606764 |
Target: 5'- cCCCGCaggGGGCucCGCGCCCACc---- -3' miRNA: 3'- -GGGCGa--CCCGcaGUGCGGGUGauagu -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 42634 | 0.7 | 0.596782 |
Target: 5'- gCCGCgGcGGCGUCGCGUCCGgUG-CGg -3' miRNA: 3'- gGGCGaC-CCGCAGUGCGGGUgAUaGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 77444 | 0.7 | 0.576898 |
Target: 5'- gCCCGCgcccGGGCGUC-CGcCCCACc---- -3' miRNA: 3'- -GGGCGa---CCCGCAGuGC-GGGUGauagu -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 146497 | 0.7 | 0.567009 |
Target: 5'- aCCCGCUGGuGUGUgGUGCCCG-UGUCu -3' miRNA: 3'- -GGGCGACC-CGCAgUGCGGGUgAUAGu -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 50530 | 0.71 | 0.557164 |
Target: 5'- -gCGCUGGGCGacaccgcagCGCGCCgGCUGcUCGc -3' miRNA: 3'- ggGCGACCCGCa--------GUGCGGgUGAU-AGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 29372 | 0.71 | 0.537629 |
Target: 5'- aCCUGauagUGGGCGUgACGCCCAgCggGUCGu -3' miRNA: 3'- -GGGCg---ACCCGCAgUGCGGGU-Ga-UAGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 31387 | 0.73 | 0.40957 |
Target: 5'- -gCGCUGGGUGgucucuggcCGCGCCCACUA-CAc -3' miRNA: 3'- ggGCGACCCGCa--------GUGCGGGUGAUaGU- -5' |
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5535 | 3' | -58.5 | NC_001806.1 | + | 29970 | 0.74 | 0.360771 |
Target: 5'- gCCGCgggGGGCGUCugGCCC-CUc--- -3' miRNA: 3'- gGGCGa--CCCGCAGugCGGGuGAuagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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