miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5535 5' -56.5 NC_001806.1 + 148159 0.66 0.880721
Target:  5'- gGggGCGCGGCGGcgccucugcGUGGG-GggGCGCGg -3'
miRNA:   3'- -CaaCGUGUCGCC---------CGCUCaCaaCGCGU- -5'
5535 5' -56.5 NC_001806.1 + 74758 0.66 0.880721
Target:  5'- --aGCGCgggAGCGGGCGAagGUGgccCGCGa -3'
miRNA:   3'- caaCGUG---UCGCCCGCU--CACaacGCGU- -5'
5535 5' -56.5 NC_001806.1 + 6092 0.66 0.866009
Target:  5'- --gGCgGCGGgGGGCGGGUcucuccgGCGCAc -3'
miRNA:   3'- caaCG-UGUCgCCCGCUCAcaa----CGCGU- -5'
5535 5' -56.5 NC_001806.1 + 98035 0.66 0.858329
Target:  5'- --gGC-CGGCGGGUGAGc---GCGCGg -3'
miRNA:   3'- caaCGuGUCGCCCGCUCacaaCGCGU- -5'
5535 5' -56.5 NC_001806.1 + 93444 0.66 0.858329
Target:  5'- --aGCGCGGCaacGGCGAGUGgucgacgGaCGCGg -3'
miRNA:   3'- caaCGUGUCGc--CCGCUCACaa-----C-GCGU- -5'
5535 5' -56.5 NC_001806.1 + 5666 0.66 0.850439
Target:  5'- cGggGCGCgagGGCGGGUGGGUcc-GCGCc -3'
miRNA:   3'- -CaaCGUG---UCGCCCGCUCAcaaCGCGu -5'
5535 5' -56.5 NC_001806.1 + 21188 0.66 0.849638
Target:  5'- --cGCgACgAGCGGGgggcccuCGGGUGggGCGCGg -3'
miRNA:   3'- caaCG-UG-UCGCCC-------GCUCACaaCGCGU- -5'
5535 5' -56.5 NC_001806.1 + 80239 0.67 0.825584
Target:  5'- cUUGaCGCuGgaGGGCG-GUGUUGCGCc -3'
miRNA:   3'- cAAC-GUGuCg-CCCGCuCACAACGCGu -5'
5535 5' -56.5 NC_001806.1 + 102899 0.67 0.825584
Target:  5'- --cGUAUcguAGC-GGCGGGUcGUUGCGCAc -3'
miRNA:   3'- caaCGUG---UCGcCCGCUCA-CAACGCGU- -5'
5535 5' -56.5 NC_001806.1 + 57533 0.67 0.816929
Target:  5'- --cGCgACAcGCGGGaaAGUGUUGgGCAa -3'
miRNA:   3'- caaCG-UGU-CGCCCgcUCACAACgCGU- -5'
5535 5' -56.5 NC_001806.1 + 117864 0.67 0.816929
Target:  5'- --cGaCGCAGCGGGCGA-UGUcgGCGgGg -3'
miRNA:   3'- caaC-GUGUCGCCCGCUcACAa-CGCgU- -5'
5535 5' -56.5 NC_001806.1 + 62835 0.67 0.804526
Target:  5'- -cUGCGCcgaGGCGGcggugggcaucagcGCGAcaaacugGUGUUGCGCAg -3'
miRNA:   3'- caACGUG---UCGCC--------------CGCU-------CACAACGCGU- -5'
5535 5' -56.5 NC_001806.1 + 95290 0.68 0.752034
Target:  5'- --cGCGCAuGgGGGCGGGgg--GCGCGg -3'
miRNA:   3'- caaCGUGU-CgCCCGCUCacaaCGCGU- -5'
5535 5' -56.5 NC_001806.1 + 71925 0.68 0.752034
Target:  5'- uUUGguCgaGGgGGGCGAGUGgacGCGCGc -3'
miRNA:   3'- cAACguG--UCgCCCGCUCACaa-CGCGU- -5'
5535 5' -56.5 NC_001806.1 + 57141 0.68 0.739304
Target:  5'- --cGCGCGGUGGGCcgcgcgaggggaggGGGUGc-GCGCAu -3'
miRNA:   3'- caaCGUGUCGCCCG--------------CUCACaaCGCGU- -5'
5535 5' -56.5 NC_001806.1 + 26819 0.71 0.609608
Target:  5'- -cUGCgACGcGCGGGCGGGgagGggGCGCc -3'
miRNA:   3'- caACG-UGU-CGCCCGCUCa--CaaCGCGu -5'
5535 5' -56.5 NC_001806.1 + 25934 0.72 0.55834
Target:  5'- --cGCGCGGCGGGCGuG-GggGCGgGg -3'
miRNA:   3'- caaCGUGUCGCCCGCuCaCaaCGCgU- -5'
5535 5' -56.5 NC_001806.1 + 2416 0.73 0.498584
Target:  5'- --gGCGCAGCGGGCccGAGgc--GCGCAg -3'
miRNA:   3'- caaCGUGUCGCCCG--CUCacaaCGCGU- -5'
5535 5' -56.5 NC_001806.1 + 91030 0.74 0.423762
Target:  5'- --gGCGCGGCGGGCGGGUucgaacaGCGCc -3'
miRNA:   3'- caaCGUGUCGCCCGCUCAcaa----CGCGu -5'
5535 5' -56.5 NC_001806.1 + 15716 0.76 0.331968
Target:  5'- -gUGUACGGCGGGCGAuUGUUcccggccGCGCGg -3'
miRNA:   3'- caACGUGUCGCCCGCUcACAA-------CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.