miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 2779 0.66 0.839246
Target:  5'- cCUGCgccgcgGCGGcccGGGGCGccGCGGGcuGGGCGg -3'
miRNA:   3'- aGACGa-----CGUU---CUCUGU--UGCCC--CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 3340 0.66 0.862799
Target:  5'- cUCcgGCcGCGGGGGGCuGGCGGGccGGGCc -3'
miRNA:   3'- -AGa-CGaCGUUCUCUG-UUGCCC--CCCGc -5'
5536 3' -57.3 NC_001806.1 + 6079 0.75 0.359108
Target:  5'- --gGggGCGGGcccGGGCGGCGGGGGGCGg -3'
miRNA:   3'- agaCgaCGUUC---UCUGUUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 6451 0.68 0.730407
Target:  5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3'
miRNA:   3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 6495 0.68 0.730407
Target:  5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3'
miRNA:   3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 6539 0.68 0.730407
Target:  5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3'
miRNA:   3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 13153 0.72 0.49997
Target:  5'- --gGCUGaCGGGGGgaugcGCAGCGGGaGGGCGu -3'
miRNA:   3'- agaCGAC-GUUCUC-----UGUUGCCC-CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 15838 0.68 0.738212
Target:  5'- aCUGUcGCAcgggccccuuuuGGGGCcGCGGGGGGCc -3'
miRNA:   3'- aGACGaCGUu-----------CUCUGuUGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 22090 0.67 0.804382
Target:  5'- -gUGCUGUAcggcggccuGGGcGACAGCcgcccgggccucuGGGGGGCGc -3'
miRNA:   3'- agACGACGU---------UCU-CUGUUG-------------CCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 22245 0.72 0.529124
Target:  5'- gCUGCUGUAcaccccggacgcGGAGGCcAUGGGGuGGCu -3'
miRNA:   3'- aGACGACGU------------UCUCUGuUGCCCC-CCGc -5'
5536 3' -57.3 NC_001806.1 + 23918 0.66 0.839246
Target:  5'- gCUGCcggGCGAG-GACcuggccGGCGGcGGGGCc -3'
miRNA:   3'- aGACGa--CGUUCuCUG------UUGCC-CCCCGc -5'
5536 3' -57.3 NC_001806.1 + 24520 0.67 0.78731
Target:  5'- gCUGCcgGCGcuGGACGGCcGGGcGGCGg -3'
miRNA:   3'- aGACGa-CGUucUCUGUUGcCCC-CCGC- -5'
5536 3' -57.3 NC_001806.1 + 24776 0.68 0.748848
Target:  5'- -gUGCUGCGcGGcGACGACGacggcccGGGGGCc -3'
miRNA:   3'- agACGACGUuCU-CUGUUGC-------CCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 24997 0.67 0.822599
Target:  5'- -gUGCUGUAAcGGGCcggGACGGggcGGGGCGc -3'
miRNA:   3'- agACGACGUUcUCUG---UUGCC---CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25110 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25144 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25178 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25212 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25246 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 25280 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.