miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 74892 0.65 0.868034
Target:  5'- cCUGCcgGCGGGcuggucGGACcuccccgaggccguuCGGGGGGCGc -3'
miRNA:   3'- aGACGa-CGUUC------UCUGuu-------------GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 13153 0.72 0.49997
Target:  5'- --gGCUGaCGGGGGgaugcGCAGCGGGaGGGCGu -3'
miRNA:   3'- agaCGAC-GUUCUC-----UGUUGCCC-CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 93698 0.72 0.509612
Target:  5'- -aUGCUGUGAGGGGu--UGGGGGGUGg -3'
miRNA:   3'- agACGACGUUCUCUguuGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 55079 0.72 0.519332
Target:  5'- --gGCUG-GAGGGucagaGACGGGGGGCGg -3'
miRNA:   3'- agaCGACgUUCUCug---UUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 22245 0.72 0.529124
Target:  5'- gCUGCUGUAcaccccggacgcGGAGGCcAUGGGGuGGCu -3'
miRNA:   3'- aGACGACGU------------UCUCUGuUGCCCC-CCGc -5'
5536 3' -57.3 NC_001806.1 + 139101 0.72 0.529124
Target:  5'- --gGCUGCGAGAugcugaccGGCucgccgcGCGGGGGGCu -3'
miRNA:   3'- agaCGACGUUCU--------CUGu------UGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 29001 0.72 0.538983
Target:  5'- cUCUGagGC-GGAGACcgaaGugGGGGGGCGg -3'
miRNA:   3'- -AGACgaCGuUCUCUG----UugCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 147465 0.72 0.538983
Target:  5'- cCUGCU-CGacAGAGGCGGCGGaggggagcGGGGCGg -3'
miRNA:   3'- aGACGAcGU--UCUCUGUUGCC--------CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 151552 0.72 0.538983
Target:  5'- --gGCgGCcGGGGGCGGCGGGGGccGCGa -3'
miRNA:   3'- agaCGaCGuUCUCUGUUGCCCCC--CGC- -5'
5536 3' -57.3 NC_001806.1 + 51086 0.72 0.49901
Target:  5'- aCUGCUGaUggGAGACGAgGGGgccgccgcccugcGGGCGc -3'
miRNA:   3'- aGACGAC-GuuCUCUGUUgCCC-------------CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 133138 0.72 0.490409
Target:  5'- uUCgcgGuCUGCGGG-GGCGAUGGGGGuGCGu -3'
miRNA:   3'- -AGa--C-GACGUUCuCUGUUGCCCCC-CGC- -5'
5536 3' -57.3 NC_001806.1 + 69600 0.73 0.480934
Target:  5'- cUCUGCgagGCGGucGGCcuguCGGGGGGCGu -3'
miRNA:   3'- -AGACGa--CGUUcuCUGuu--GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148131 0.79 0.199526
Target:  5'- --gGCUGCGuGAGACGccccgcccgucACGGGGGGCGc -3'
miRNA:   3'- agaCGACGUuCUCUGU-----------UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148175 0.79 0.220135
Target:  5'- cUCUGCguggggggGCGcGGGGCGuccgGCGGGGGGCGg -3'
miRNA:   3'- -AGACGa-------CGUuCUCUGU----UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 67532 0.77 0.286255
Target:  5'- --cGCgGCGAGAGAU--CGGGGGGCGc -3'
miRNA:   3'- agaCGaCGUUCUCUGuuGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 147774 0.77 0.292986
Target:  5'- --cGCggacGCGGGGGGCccggGGCGGGGGGCGg -3'
miRNA:   3'- agaCGa---CGUUCUCUG----UUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 151435 0.76 0.299839
Target:  5'- --gGCccaccgGCGGGGGGCGGCGGcGGGGCGg -3'
miRNA:   3'- agaCGa-----CGUUCUCUGUUGCC-CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 6079 0.75 0.359108
Target:  5'- --gGggGCGGGcccGGGCGGCGGGGGGCGg -3'
miRNA:   3'- agaCgaCGUUC---UCUGUUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 29106 0.73 0.471549
Target:  5'- gCUGCUggggccGCAGGGcGugGAUgGGGGGGCGg -3'
miRNA:   3'- aGACGA------CGUUCU-CugUUG-CCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 83897 0.73 0.480934
Target:  5'- cCUGgaCUGCAcggAGGGuCGGCGcGGGGGCGg -3'
miRNA:   3'- aGAC--GACGU---UCUCuGUUGC-CCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.