miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 151276 0.67 0.805265
Target:  5'- --gGCgGUggGGGcCGGggcCGGGGGGCGg -3'
miRNA:   3'- agaCGaCGuuCUCuGUU---GCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 36640 0.67 0.805265
Target:  5'- cCUGCcaggugGCGuuGAGGCAguaAgGGGGGGCc -3'
miRNA:   3'- aGACGa-----CGUu-CUCUGU---UgCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 22090 0.67 0.804382
Target:  5'- -gUGCUGUAcggcggccuGGGcGACAGCcgcccgggccucuGGGGGGCGc -3'
miRNA:   3'- agACGACGU---------UCU-CUGUUG-------------CCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 34465 0.67 0.796361
Target:  5'- --aGgaGgAGGAGAaGGCGGGGGGgGg -3'
miRNA:   3'- agaCgaCgUUCUCUgUUGCCCCCCgC- -5'
5536 3' -57.3 NC_001806.1 + 24520 0.67 0.78731
Target:  5'- gCUGCcgGCGcuGGACGGCcGGGcGGCGg -3'
miRNA:   3'- aGACGa-CGUucUCUGUUGcCCC-CCGC- -5'
5536 3' -57.3 NC_001806.1 + 45283 0.67 0.78731
Target:  5'- --aGCgGCGGGAGACGcgggcccgcGCGGGGagccgcccGGCGa -3'
miRNA:   3'- agaCGaCGUUCUCUGU---------UGCCCC--------CCGC- -5'
5536 3' -57.3 NC_001806.1 + 53097 0.67 0.78731
Target:  5'- --aGacgGUGAGcGAgGACGGGGGGCGu -3'
miRNA:   3'- agaCga-CGUUCuCUgUUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 143126 0.67 0.77812
Target:  5'- gCUGCcGgGAGGGGCcGCGGauGGGCGg -3'
miRNA:   3'- aGACGaCgUUCUCUGuUGCCc-CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 95283 0.68 0.768801
Target:  5'- -gUGCUggcgcGCAuGGGG--GCGGGGGGCGc -3'
miRNA:   3'- agACGA-----CGUuCUCUguUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 34289 0.68 0.767862
Target:  5'- --gGggGCGGGAuGggguuuaGCGGCGGGGGGCGg -3'
miRNA:   3'- agaCgaCGUUCU-C-------UGUUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 140428 0.68 0.759361
Target:  5'- --gGCaGUGAGGGugGCAugGGGGGGgGg -3'
miRNA:   3'- agaCGaCGUUCUC--UGUugCCCCCCgC- -5'
5536 3' -57.3 NC_001806.1 + 29954 0.68 0.749809
Target:  5'- --aGUcGCGAGccgcGGCGccGCGGGGGGCGu -3'
miRNA:   3'- agaCGaCGUUCu---CUGU--UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 24776 0.68 0.748848
Target:  5'- -gUGCUGCGcGGcGACGACGacggcccGGGGGCc -3'
miRNA:   3'- agACGACGUuCU-CUGUUGC-------CCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 75546 0.68 0.744028
Target:  5'- cCUGUUGCAcgccgaAGGGACGGcCGGGgaccacucccccagcGGGCGc -3'
miRNA:   3'- aGACGACGU------UCUCUGUU-GCCC---------------CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 94796 0.68 0.740154
Target:  5'- -aUGCgcugGCcc-GGAC-GCGGGGGGCGa -3'
miRNA:   3'- agACGa---CGuucUCUGuUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 15838 0.68 0.738212
Target:  5'- aCUGUcGCAcgggccccuuuuGGGGCcGCGGGGGGCc -3'
miRNA:   3'- aGACGaCGUu-----------CUCUGuUGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 6495 0.68 0.730407
Target:  5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3'
miRNA:   3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 6539 0.68 0.730407
Target:  5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3'
miRNA:   3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 134301 0.68 0.730407
Target:  5'- --gGC--CGAGAGA--ACGGGGGGCGg -3'
miRNA:   3'- agaCGacGUUCUCUguUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 6451 0.68 0.730407
Target:  5'- --cGCggggGCGgaggAGGGGgGACGcGGGGGCGg -3'
miRNA:   3'- agaCGa---CGU----UCUCUgUUGC-CCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.