miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 3' -57.3 NC_001806.1 + 151435 0.76 0.299839
Target:  5'- --gGCccaccgGCGGGGGGCGGCGGcGGGGCGg -3'
miRNA:   3'- agaCGa-----CGUUCUCUGUUGCC-CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 147774 0.77 0.292986
Target:  5'- --cGCggacGCGGGGGGCccggGGCGGGGGGCGg -3'
miRNA:   3'- agaCGa---CGUUCUCUG----UUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 67532 0.77 0.286255
Target:  5'- --cGCgGCGAGAGAU--CGGGGGGCGc -3'
miRNA:   3'- agaCGaCGUUCUCUGuuGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148175 0.79 0.220135
Target:  5'- cUCUGCguggggggGCGcGGGGCGuccgGCGGGGGGCGg -3'
miRNA:   3'- -AGACGa-------CGUuCUCUGU----UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 148131 0.79 0.199526
Target:  5'- --gGCUGCGuGAGACGccccgcccgucACGGGGGGCGc -3'
miRNA:   3'- agaCGACGUuCUCUGU-----------UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 55079 0.72 0.519332
Target:  5'- --gGCUG-GAGGGucagaGACGGGGGGCGg -3'
miRNA:   3'- agaCGACgUUCUCug---UUGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 22245 0.72 0.529124
Target:  5'- gCUGCUGUAcaccccggacgcGGAGGCcAUGGGGuGGCu -3'
miRNA:   3'- aGACGACGU------------UCUCUGuUGCCCC-CCGc -5'
5536 3' -57.3 NC_001806.1 + 25110 0.69 0.680583
Target:  5'- --gGCgagggGCGGGAGGgGGCGaGGGGCGg -3'
miRNA:   3'- agaCGa----CGUUCUCUgUUGCcCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 91021 0.69 0.680583
Target:  5'- --gGCgGCAAGGGcGCGGCGGGcGGGUu -3'
miRNA:   3'- agaCGaCGUUCUC-UGUUGCCC-CCCGc -5'
5536 3' -57.3 NC_001806.1 + 74957 0.69 0.660315
Target:  5'- --cGCUGCGGGcGGAC-AUGuGGGGGCu -3'
miRNA:   3'- agaCGACGUUC-UCUGuUGC-CCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 33810 0.69 0.660315
Target:  5'- --gGCcgGCGGGuGGACucGCGGGGGGCc -3'
miRNA:   3'- agaCGa-CGUUC-UCUGu-UGCCCCCCGc -5'
5536 3' -57.3 NC_001806.1 + 62833 0.7 0.639957
Target:  5'- aUCUGC-GCc-GAGGCGGCGGuGGGCa -3'
miRNA:   3'- -AGACGaCGuuCUCUGUUGCCcCCCGc -5'
5536 3' -57.3 NC_001806.1 + 33620 0.7 0.636899
Target:  5'- --cGCgggGCGGGGGGCcggauacccacacgGGCGGGGGGgGg -3'
miRNA:   3'- agaCGa--CGUUCUCUG--------------UUGCCCCCCgC- -5'
5536 3' -57.3 NC_001806.1 + 83651 0.7 0.617537
Target:  5'- aCUGCUGCuuccguaccGACGGCGGGgugcccGGGCGg -3'
miRNA:   3'- aGACGACGuucu-----CUGUUGCCC------CCCGC- -5'
5536 3' -57.3 NC_001806.1 + 57821 0.7 0.609393
Target:  5'- aUCUGCggGCGGGGGu--GCGGuGGGCGa -3'
miRNA:   3'- -AGACGa-CGUUCUCuguUGCCcCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 52584 0.71 0.578979
Target:  5'- --aGCgGCccgGGGGGGCAucgcGCGGGGGGUGg -3'
miRNA:   3'- agaCGaCG---UUCUCUGU----UGCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 151552 0.72 0.538983
Target:  5'- --gGCgGCcGGGGGCGGCGGGGGccGCGa -3'
miRNA:   3'- agaCGaCGuUCUCUGUUGCCCCC--CGC- -5'
5536 3' -57.3 NC_001806.1 + 147465 0.72 0.538983
Target:  5'- cCUGCU-CGacAGAGGCGGCGGaggggagcGGGGCGg -3'
miRNA:   3'- aGACGAcGU--UCUCUGUUGCC--------CCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 29001 0.72 0.538983
Target:  5'- cUCUGagGC-GGAGACcgaaGugGGGGGGCGg -3'
miRNA:   3'- -AGACgaCGuUCUCUG----UugCCCCCCGC- -5'
5536 3' -57.3 NC_001806.1 + 139101 0.72 0.529124
Target:  5'- --gGCUGCGAGAugcugaccGGCucgccgcGCGGGGGGCu -3'
miRNA:   3'- agaCGACGUUCU--------CUGu------UGCCCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.