miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 150950 0.66 0.374762
Target:  5'- gGCGCCggaaCCgagCCCgguCGGCCCGCUCg-- -3'
miRNA:   3'- aUGCGGg---GGa--GGG---GCCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 4480 0.66 0.352101
Target:  5'- gACGgaCCCCgCCCgaCGGCCCGCgCCUc- -3'
miRNA:   3'- aUGCg-GGGGaGGG--GCCGGGCG-GGAaa -5'
5536 5' -67.2 NC_001806.1 + 72113 0.66 0.352101
Target:  5'- aAUGCCCCgcacacacguuCUUCgCCGGCCCguggGCCCUg- -3'
miRNA:   3'- aUGCGGGG-----------GAGG-GGCCGGG----CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 147991 0.66 0.367099
Target:  5'- gACGCCCCCcgcggcgCCgCGGCUCGCgaCUg- -3'
miRNA:   3'- aUGCGGGGGa------GGgGCCGGGCGg-GAaa -5'
5536 5' -67.2 NC_001806.1 + 52662 0.66 0.382531
Target:  5'- -cCGCCCCUcCCCCGaCCuCGCCUa-- -3'
miRNA:   3'- auGCGGGGGaGGGGCcGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 91770 0.66 0.374762
Target:  5'- cUACGCCgCCUUCUCGGCCCugaaGCgCg-- -3'
miRNA:   3'- -AUGCGGgGGAGGGGCCGGG----CGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 24803 0.66 0.359546
Target:  5'- gGgGCCCUg-CCgCCGGCgCCGCCCg-- -3'
miRNA:   3'- aUgCGGGGgaGG-GGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 112009 0.66 0.374762
Target:  5'- aACGCCgCCUUCagCCUGGCCaccgaggccauCGCCCUg- -3'
miRNA:   3'- aUGCGG-GGGAG--GGGCCGG-----------GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 21494 0.66 0.359546
Target:  5'- gACGCCgCCggcgaccgggCCCCGGCCCGgggCCg-- -3'
miRNA:   3'- aUGCGGgGGa---------GGGGCCGGGCg--GGaaa -5'
5536 5' -67.2 NC_001806.1 + 6821 0.66 0.359546
Target:  5'- aGCGUCCCCugcugcgcucUCCCgGGCugCUGCCCg-- -3'
miRNA:   3'- aUGCGGGGG----------AGGGgCCG--GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 97806 0.66 0.352101
Target:  5'- cACGCCCCCgccgCCCgGGgCCaGCgCCa-- -3'
miRNA:   3'- aUGCGGGGGa---GGGgCCgGG-CG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 47193 0.66 0.382531
Target:  5'- -cCGCCCCCcCgCCCGGCCgGggguCCCa-- -3'
miRNA:   3'- auGCGGGGGaG-GGGCCGGgC----GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 46983 0.66 0.398388
Target:  5'- cGCuGCCCaCUUCCCCccauaaGGUCCGUCCg-- -3'
miRNA:   3'- aUG-CGGG-GGAGGGG------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 69819 0.66 0.359546
Target:  5'- ---aCCCCCaccaCCCCGGCCaCGCCgCUg- -3'
miRNA:   3'- augcGGGGGa---GGGGCCGG-GCGG-GAaa -5'
5536 5' -67.2 NC_001806.1 + 96233 0.66 0.360296
Target:  5'- aGCGCCCCCgacggcuguaucggcCCCCGGUCgGUCgUg- -3'
miRNA:   3'- aUGCGGGGGa--------------GGGGCCGGgCGGgAaa -5'
5536 5' -67.2 NC_001806.1 + 46663 0.66 0.367099
Target:  5'- cGCGCCCCaccgagcgaccuCgagCCCCaGCCCGCuCCg-- -3'
miRNA:   3'- aUGCGGGG------------Ga--GGGGcCGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 23293 0.66 0.352101
Target:  5'- aGCGCaagagUCCCggCCCGGCCCGgCCg-- -3'
miRNA:   3'- aUGCG-----GGGGagGGGCCGGGCgGGaaa -5'
5536 5' -67.2 NC_001806.1 + 84809 0.66 0.367099
Target:  5'- -cCGaCCCCCaucgccgcggCUCCGGCCCggGCCCUa- -3'
miRNA:   3'- auGC-GGGGGa---------GGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 147148 0.66 0.374762
Target:  5'- -uUGUCuCCCUCCCagggcaccgaCGGcCCCGCCCg-- -3'
miRNA:   3'- auGCGG-GGGAGGG----------GCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120350 0.66 0.352101
Target:  5'- -uCGUCCCgCUCggcgacgaccuCCCGGCCCGCUUUg- -3'
miRNA:   3'- auGCGGGG-GAG-----------GGGCCGGGCGGGAaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.