miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 293 0.68 0.283748
Target:  5'- ---cCCCCgCUCCCgCGGCCCcGCCCc-- -3'
miRNA:   3'- augcGGGG-GAGGG-GCCGGG-CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 337 0.67 0.309757
Target:  5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3'
miRNA:   3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5'
5536 5' -67.2 NC_001806.1 + 595 0.8 0.03604
Target:  5'- -cCGCCCCCUCCCCaGCCCcaGCCCUc- -3'
miRNA:   3'- auGCGGGGGAGGGGcCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 624 0.76 0.07757
Target:  5'- --aGCCccagCCCUCCCCGGCCCcaGCCCUc- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 656 0.76 0.081581
Target:  5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 688 0.76 0.081581
Target:  5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 720 0.69 0.226324
Target:  5'- --gGCCccagCCCUCCCCGGCgCGUCCc-- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGgGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 846 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 880 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 914 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 948 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 982 0.72 0.147767
Target:  5'- -uCGCCCCCUCCCgccCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1015 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1049 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1083 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1117 0.68 0.296531
Target:  5'- -uCGCCCCCUCCC--GCCCcucGCCCc-- -3'
miRNA:   3'- auGCGGGGGAGGGgcCGGG---CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1144 0.68 0.303088
Target:  5'- -cCGCCCCUcgCCCCcuCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGa-GGGGccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1236 0.7 0.211127
Target:  5'- aGCGCCCCg-CCCCGuCCCGgCCCg-- -3'
miRNA:   3'- aUGCGGGGgaGGGGCcGGGC-GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 1530 0.72 0.144225
Target:  5'- gGCGCaaaagUCCCUCCgCGGCCCGCgCCa-- -3'
miRNA:   3'- aUGCG-----GGGGAGGgGCCGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 4126 0.69 0.236963
Target:  5'- gGCGCCCCCcagaggCCCgGGCggcugUCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGa-----GGGgCCG-----GGCGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.