Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5536 | 5' | -67.2 | NC_001806.1 | + | 46983 | 0.66 | 0.398388 |
Target: 5'- cGCuGCCCaCUUCCCCccauaaGGUCCGUCCg-- -3' miRNA: 3'- aUG-CGGG-GGAGGGG------CCGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 125721 | 0.75 | 0.087969 |
Target: 5'- cGCGCCCCUcuggccaucggUCCCCucuGGCCCGCCUg-- -3' miRNA: 3'- aUGCGGGGG-----------AGGGG---CCGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 30457 | 0.75 | 0.094832 |
Target: 5'- gGCGCCgCCCcCUCCGGCgCCGCCCc-- -3' miRNA: 3'- aUGCGG-GGGaGGGGCCG-GGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 101576 | 0.74 | 0.104773 |
Target: 5'- aAUGCCCCCUCCCCc-CUCGCCCa-- -3' miRNA: 3'- aUGCGGGGGAGGGGccGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 150707 | 0.74 | 0.112863 |
Target: 5'- -cCGCCCCCgaggCGGCCCGCCCUg- -3' miRNA: 3'- auGCGGGGGagggGCCGGGCGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 78925 | 0.73 | 0.118578 |
Target: 5'- aGCGgCCCCUCgCCCggGGCCCGCCgUg- -3' miRNA: 3'- aUGCgGGGGAG-GGG--CCGGGCGGgAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 82428 | 0.73 | 0.124561 |
Target: 5'- gGgGCCCgCCUCCCCGucCCCGCCCc-- -3' miRNA: 3'- aUgCGGG-GGAGGGGCc-GGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 26399 | 0.73 | 0.127656 |
Target: 5'- cGCgGCCCCCgccgcCCCCGG-CCGCCCg-- -3' miRNA: 3'- aUG-CGGGGGa----GGGGCCgGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 120758 | 0.73 | 0.130823 |
Target: 5'- gGCGCCUUC-CCCCGGCCaccuCGCCCa-- -3' miRNA: 3'- aUGCGGGGGaGGGGCCGG----GCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 5841 | 0.76 | 0.081581 |
Target: 5'- -cCGUCCCCgggccCCCCGGuCCCGCCCg-- -3' miRNA: 3'- auGCGGGGGa----GGGGCC-GGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 688 | 0.76 | 0.081581 |
Target: 5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3' miRNA: 3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 656 | 0.76 | 0.081581 |
Target: 5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3' miRNA: 3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 151129 | 0.81 | 0.033354 |
Target: 5'- gGCGCCCCCUCCCC-GCCCGCgCg-- -3' miRNA: 3'- aUGCGGGGGAGGGGcCGGGCGgGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 23391 | 0.81 | 0.034227 |
Target: 5'- cGCGcCCCCCUCCCCGcGCCCGCgCCc-- -3' miRNA: 3'- aUGC-GGGGGAGGGGC-CGGGCG-GGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 595 | 0.8 | 0.03604 |
Target: 5'- -cCGCCCCCUCCCCaGCCCcaGCCCUc- -3' miRNA: 3'- auGCGGGGGAGGGGcCGGG--CGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 59002 | 0.8 | 0.040996 |
Target: 5'- gGCGCCCCCUCCuCCGGC-UGCCCg-- -3' miRNA: 3'- aUGCGGGGGAGG-GGCCGgGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 20159 | 0.78 | 0.054357 |
Target: 5'- -cCGCCCCCcgccgCCCgGGCCCGCCCc-- -3' miRNA: 3'- auGCGGGGGa----GGGgCCGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 23423 | 0.78 | 0.057205 |
Target: 5'- cACGCCCCCggggCCCGaGCCCGCCCc-- -3' miRNA: 3'- aUGCGGGGGag--GGGC-CGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 26673 | 0.77 | 0.06334 |
Target: 5'- -cCGCCCCCcggCCCCGGCCCccaccGCCCg-- -3' miRNA: 3'- auGCGGGGGa--GGGGCCGGG-----CGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 624 | 0.76 | 0.07757 |
Target: 5'- --aGCCccagCCCUCCCCGGCCCcaGCCCUc- -3' miRNA: 3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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