miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 46983 0.66 0.398388
Target:  5'- cGCuGCCCaCUUCCCCccauaaGGUCCGUCCg-- -3'
miRNA:   3'- aUG-CGGG-GGAGGGG------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 125721 0.75 0.087969
Target:  5'- cGCGCCCCUcuggccaucggUCCCCucuGGCCCGCCUg-- -3'
miRNA:   3'- aUGCGGGGG-----------AGGGG---CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 30457 0.75 0.094832
Target:  5'- gGCGCCgCCCcCUCCGGCgCCGCCCc-- -3'
miRNA:   3'- aUGCGG-GGGaGGGGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 101576 0.74 0.104773
Target:  5'- aAUGCCCCCUCCCCc-CUCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGAGGGGccGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 150707 0.74 0.112863
Target:  5'- -cCGCCCCCgaggCGGCCCGCCCUg- -3'
miRNA:   3'- auGCGGGGGagggGCCGGGCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 78925 0.73 0.118578
Target:  5'- aGCGgCCCCUCgCCCggGGCCCGCCgUg- -3'
miRNA:   3'- aUGCgGGGGAG-GGG--CCGGGCGGgAaa -5'
5536 5' -67.2 NC_001806.1 + 82428 0.73 0.124561
Target:  5'- gGgGCCCgCCUCCCCGucCCCGCCCc-- -3'
miRNA:   3'- aUgCGGG-GGAGGGGCc-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26399 0.73 0.127656
Target:  5'- cGCgGCCCCCgccgcCCCCGG-CCGCCCg-- -3'
miRNA:   3'- aUG-CGGGGGa----GGGGCCgGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 120758 0.73 0.130823
Target:  5'- gGCGCCUUC-CCCCGGCCaccuCGCCCa-- -3'
miRNA:   3'- aUGCGGGGGaGGGGCCGG----GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 5841 0.76 0.081581
Target:  5'- -cCGUCCCCgggccCCCCGGuCCCGCCCg-- -3'
miRNA:   3'- auGCGGGGGa----GGGGCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 688 0.76 0.081581
Target:  5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 656 0.76 0.081581
Target:  5'- --gGCCccagCCCUCCCCGGCCCcaGCCCUc- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 151129 0.81 0.033354
Target:  5'- gGCGCCCCCUCCCC-GCCCGCgCg-- -3'
miRNA:   3'- aUGCGGGGGAGGGGcCGGGCGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 23391 0.81 0.034227
Target:  5'- cGCGcCCCCCUCCCCGcGCCCGCgCCc-- -3'
miRNA:   3'- aUGC-GGGGGAGGGGC-CGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 595 0.8 0.03604
Target:  5'- -cCGCCCCCUCCCCaGCCCcaGCCCUc- -3'
miRNA:   3'- auGCGGGGGAGGGGcCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 59002 0.8 0.040996
Target:  5'- gGCGCCCCCUCCuCCGGC-UGCCCg-- -3'
miRNA:   3'- aUGCGGGGGAGG-GGCCGgGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 20159 0.78 0.054357
Target:  5'- -cCGCCCCCcgccgCCCgGGCCCGCCCc-- -3'
miRNA:   3'- auGCGGGGGa----GGGgCCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 23423 0.78 0.057205
Target:  5'- cACGCCCCCggggCCCGaGCCCGCCCc-- -3'
miRNA:   3'- aUGCGGGGGag--GGGC-CGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 26673 0.77 0.06334
Target:  5'- -cCGCCCCCcggCCCCGGCCCccaccGCCCg-- -3'
miRNA:   3'- auGCGGGGGa--GGGGCCGGG-----CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 624 0.76 0.07757
Target:  5'- --aGCCccagCCCUCCCCGGCCCcaGCCCUc- -3'
miRNA:   3'- augCGG----GGGAGGGGCCGGG--CGGGAaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.