Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5536 | 5' | -67.2 | NC_001806.1 | + | 69819 | 0.66 | 0.359546 |
Target: 5'- ---aCCCCCaccaCCCCGGCCaCGCCgCUg- -3' miRNA: 3'- augcGGGGGa---GGGGCCGG-GCGG-GAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 120350 | 0.66 | 0.352101 |
Target: 5'- -uCGUCCCgCUCggcgacgaccuCCCGGCCCGCUUUg- -3' miRNA: 3'- auGCGGGG-GAG-----------GGGCCGGGCGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 97806 | 0.66 | 0.352101 |
Target: 5'- cACGCCCCCgccgCCCgGGgCCaGCgCCa-- -3' miRNA: 3'- aUGCGGGGGa---GGGgCCgGG-CG-GGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 23293 | 0.66 | 0.352101 |
Target: 5'- aGCGCaagagUCCCggCCCGGCCCGgCCg-- -3' miRNA: 3'- aUGCG-----GGGGagGGGCCGGGCgGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 72113 | 0.66 | 0.352101 |
Target: 5'- aAUGCCCCgcacacacguuCUUCgCCGGCCCguggGCCCUg- -3' miRNA: 3'- aUGCGGGG-----------GAGG-GGCCGGG----CGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 4480 | 0.66 | 0.352101 |
Target: 5'- gACGgaCCCCgCCCgaCGGCCCGCgCCUc- -3' miRNA: 3'- aUGCg-GGGGaGGG--GCCGGGCG-GGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 93859 | 0.67 | 0.344767 |
Target: 5'- cGCGCCgCCgacUCCCGGCuuGCCg--- -3' miRNA: 3'- aUGCGGgGGa--GGGGCCGggCGGgaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 87311 | 0.67 | 0.344767 |
Target: 5'- cGCGCCCUCcggCUCCcGCUCGCCCc-- -3' miRNA: 3'- aUGCGGGGGa--GGGGcCGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 85442 | 0.67 | 0.344767 |
Target: 5'- gUACGUCaUCUUUCCCGGCacguCCGCCCa-- -3' miRNA: 3'- -AUGCGG-GGGAGGGGCCG----GGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 5523 | 0.67 | 0.337543 |
Target: 5'- --gGCCCCCcgcccCCCCGGCggGCCCa-- -3' miRNA: 3'- augCGGGGGa----GGGGCCGggCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 67166 | 0.67 | 0.337543 |
Target: 5'- -uCGCCUCCaucagcuggCCCCaGGCCuCGCCCa-- -3' miRNA: 3'- auGCGGGGGa--------GGGG-CCGG-GCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 70501 | 0.67 | 0.337543 |
Target: 5'- cACGCCCgaCCgccuggggCCCUGGCCC-CCCg-- -3' miRNA: 3'- aUGCGGG--GGa-------GGGGCCGGGcGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 129646 | 0.67 | 0.337543 |
Target: 5'- --aGCUCCUgcaggcugCCCUGcGCCCGCCCg-- -3' miRNA: 3'- augCGGGGGa-------GGGGC-CGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 128853 | 0.67 | 0.33043 |
Target: 5'- cACGCCgUCCgcgCCCCGGUCaUGCCUUUc -3' miRNA: 3'- aUGCGG-GGGa--GGGGCCGG-GCGGGAAa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 145978 | 0.67 | 0.33043 |
Target: 5'- -cCGaCCCCCUuuugggcgCCCCGuCCCGCCCc-- -3' miRNA: 3'- auGC-GGGGGA--------GGGGCcGGGCGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 48091 | 0.67 | 0.326215 |
Target: 5'- gACGaCCCCUCCCaCccugcauggcaaccaGGCCCGCgCCUc- -3' miRNA: 3'- aUGCgGGGGAGGG-G---------------CCGGGCG-GGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 79206 | 0.67 | 0.323428 |
Target: 5'- cGCGCCCCCgacgaccagagccCCUCGGUCCcaaacccgacccccgGCCCUg- -3' miRNA: 3'- aUGCGGGGGa------------GGGGCCGGG---------------CGGGAaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 152047 | 0.67 | 0.309757 |
Target: 5'- cACGCCgCCCggaCCgCC-GCCCGCCUUUUu -3' miRNA: 3'- aUGCGG-GGGa--GG-GGcCGGGCGGGAAA- -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 144959 | 0.67 | 0.309757 |
Target: 5'- --gGCCCCCguggcggCCCGGCCCgggGCCCc-- -3' miRNA: 3'- augCGGGGGag-----GGGCCGGG---CGGGaaa -5' |
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5536 | 5' | -67.2 | NC_001806.1 | + | 77441 | 0.67 | 0.309757 |
Target: 5'- gACGCCCgCgCCCgGGCguCCGCCCc-- -3' miRNA: 3'- aUGCGGGgGaGGGgCCG--GGCGGGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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