Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 3' | -58.3 | NC_001806.1 | + | 146922 | 0.67 | 0.775019 |
Target: 5'- cGAuGuuCCCCGucuccauguccaGGAUGGGCAGGcAGUc -3' miRNA: 3'- uCU-CugGGGGC------------UCUACCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 144820 | 0.67 | 0.756379 |
Target: 5'- gAGGGGCCCCCGAccgcGGCGGuccgGGCc -3' miRNA: 3'- -UCUCUGGGGGCUcuacCCGUCca--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 43483 | 0.67 | 0.746895 |
Target: 5'- cGAGGCCCCCacGAucGAcgGGGCc-GUGGCg -3' miRNA: 3'- uCUCUGGGGG--CU--CUa-CCCGucCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 66803 | 0.67 | 0.746895 |
Target: 5'- gGGAgGAUCacggCCGAGcgGGGCcggcccGGGUGGCc -3' miRNA: 3'- -UCU-CUGGg---GGCUCuaCCCG------UCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 95390 | 0.67 | 0.765756 |
Target: 5'- gGGAG-CUCCCGg---GGGCGGG-GGCg -3' miRNA: 3'- -UCUCuGGGGGCucuaCCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 10367 | 0.67 | 0.765756 |
Target: 5'- cGGGGGCgcugggccaagaCCUCGGGG-GGGCGGGgggaGGCg -3' miRNA: 3'- -UCUCUG------------GGGGCUCUaCCCGUCCa---UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 112055 | 0.67 | 0.746895 |
Target: 5'- gGGAGGCCCU--GGAcGGGaCGGGUaucGGCg -3' miRNA: 3'- -UCUCUGGGGgcUCUaCCC-GUCCA---UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 31348 | 0.67 | 0.746895 |
Target: 5'- aAGGGACgCCCCccguguuugugGGGAgGGGgGGGUcgGGCg -3' miRNA: 3'- -UCUCUG-GGGG-----------CUCUaCCCgUCCA--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 140708 | 0.67 | 0.746895 |
Target: 5'- uGGAacGCCCCCGucuguGGUGGcGCGGGgcGUu -3' miRNA: 3'- -UCUc-UGGGGGCu----CUACC-CGUCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 32 | 0.67 | 0.756379 |
Target: 5'- --cGACCCCCGGGGgguguguuuUGGGgGGGgcccguuuucGGCg -3' miRNA: 3'- ucuCUGGGGGCUCU---------ACCCgUCCa---------UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 113746 | 0.67 | 0.784157 |
Target: 5'- --uGACCggCCCgGAGcUGGGCGGGcagGGCa -3' miRNA: 3'- ucuCUGG--GGG-CUCuACCCGUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 148192 | 0.68 | 0.698186 |
Target: 5'- cGGGGCgUCCGGcGggGGGCGGGcGGUa -3' miRNA: 3'- uCUCUGgGGGCU-CuaCCCGUCCaUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 96378 | 0.68 | 0.678264 |
Target: 5'- cAGGGcGCCCCCGcGcggGGGCGccGGUGGUu -3' miRNA: 3'- -UCUC-UGGGGGCuCua-CCCGU--CCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 42387 | 0.68 | 0.687251 |
Target: 5'- cGuGGCCCCCGcgccccccAGAcgcUGGGCcugaagcAGGUAGUa -3' miRNA: 3'- uCuCUGGGGGC--------UCU---ACCCG-------UCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72694 | 0.68 | 0.70807 |
Target: 5'- -cGGGCgCCCGAcGAuguaUGGGC-GGUGGCc -3' miRNA: 3'- ucUCUGgGGGCU-CU----ACCCGuCCAUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 28288 | 0.68 | 0.717892 |
Target: 5'- gGGGGACCCCCacucauacacggGAGccGGGCgccauguuGGGgcGCc -3' miRNA: 3'- -UCUCUGGGGG------------CUCuaCCCG--------UCCauCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 72183 | 0.68 | 0.717892 |
Target: 5'- --uGGCCCCCuaGGGAUGGGgcuguuCAGGgacGGCg -3' miRNA: 3'- ucuCUGGGGG--CUCUACCC------GUCCa--UCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 63915 | 0.68 | 0.727643 |
Target: 5'- cGAuGCCCCCGuuGcGGGCgAGGaUGGCa -3' miRNA: 3'- uCUcUGGGGGCucUaCCCG-UCC-AUCG- -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 99755 | 0.68 | 0.727643 |
Target: 5'- --cGGCCUCCGGGGgacaaaGGGCcGGGUGGg -3' miRNA: 3'- ucuCUGGGGGCUCUa-----CCCG-UCCAUCg -5' |
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5537 | 3' | -58.3 | NC_001806.1 | + | 86014 | 0.68 | 0.727643 |
Target: 5'- cGGGGGCgCUuggCCGGGGaGGGCAGGgccGCg -3' miRNA: 3'- -UCUCUG-GG---GGCUCUaCCCGUCCau-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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