miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 50776 0.7 0.297039
Target:  5'- gCGUuuGaCGGGGgauucACGGCCCCcGAGGUg -3'
miRNA:   3'- gGCGggC-GCCCC-----UGCCGGGGcCUUCA- -5'
5537 5' -66 NC_001806.1 + 50642 0.7 0.315958
Target:  5'- aCGCCCgggcguGCGGGGAcgcgcacCGGCgCCGGGAc- -3'
miRNA:   3'- gGCGGG------CGCCCCU-------GCCGgGGCCUUca -5'
5537 5' -66 NC_001806.1 + 49615 0.68 0.404472
Target:  5'- cCCGCCCaaGGuGGA-GGUUCUGGAGGg -3'
miRNA:   3'- -GGCGGGcgCC-CCUgCCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 49153 0.72 0.233278
Target:  5'- cUCGCCCGUGGcGGACGaGCCagCGGgcGa -3'
miRNA:   3'- -GGCGGGCGCC-CCUGC-CGGg-GCCuuCa -5'
5537 5' -66 NC_001806.1 + 48294 0.66 0.524249
Target:  5'- aCGCCCccgaagagGCGGGGcugGCGGCUCCGc---- -3'
miRNA:   3'- gGCGGG--------CGCCCC---UGCCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 46189 0.66 0.483149
Target:  5'- cCCGaaCCCaGCGGGuGgcgacuaaggcccccGCGGCCCCGGcGGc -3'
miRNA:   3'- -GGC--GGG-CGCCC-C---------------UGCCGGGGCCuUCa -5'
5537 5' -66 NC_001806.1 + 44504 0.67 0.428715
Target:  5'- gCCGUuuGCcGGGACGGUgaCCGGgcGa -3'
miRNA:   3'- -GGCGggCGcCCCUGCCGg-GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 43577 0.71 0.255023
Target:  5'- aUGUCCGUGGGGGCGGCugacaaguCCgCGGAuGUg -3'
miRNA:   3'- gGCGGGCGCCCCUGCCG--------GG-GCCUuCA- -5'
5537 5' -66 NC_001806.1 + 42845 0.69 0.323369
Target:  5'- uUCGCCCGCGGgccuGGugGGUCCCa----- -3'
miRNA:   3'- -GGCGGGCGCC----CCugCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 41818 0.77 0.107486
Target:  5'- cCCGCaauaCGCGGGGGCgggcgucagGGCCCCGGgcGc -3'
miRNA:   3'- -GGCGg---GCGCCCCUG---------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 41371 0.67 0.461471
Target:  5'- gCCGCCa--GGGGGCaucacggGGCCCUGGgcGc -3'
miRNA:   3'- -GGCGGgcgCCCCUG-------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 39180 0.68 0.388799
Target:  5'- aUCGCCC-CGGGGcgGCGGCCUugucugcguucuUGGggGc -3'
miRNA:   3'- -GGCGGGcGCCCC--UGCCGGG------------GCCuuCa -5'
5537 5' -66 NC_001806.1 + 38802 0.66 0.497278
Target:  5'- uCCGCuuCCGCGGGGAccCGGg--CGGggGUg -3'
miRNA:   3'- -GGCG--GGCGCCCCU--GCCgggGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 37996 0.7 0.295132
Target:  5'- aCGCCgGCGGGGGucCGacaaaccaucggcaGCCCCGGGAc- -3'
miRNA:   3'- gGCGGgCGCCCCU--GC--------------CGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 37949 0.66 0.524249
Target:  5'- cCCGCCC-CGGGG-CGGggucCCCCaGGGu-- -3'
miRNA:   3'- -GGCGGGcGCCCCuGCC----GGGG-CCUuca -5'
5537 5' -66 NC_001806.1 + 35122 0.66 0.497278
Target:  5'- gCGuCCCGUGGacGCGGCCCuCGGuuGg -3'
miRNA:   3'- gGC-GGGCGCCccUGCCGGG-GCCuuCa -5'
5537 5' -66 NC_001806.1 + 34770 0.71 0.260714
Target:  5'- -aGCCgGCGGGG-CGGUUCgGGggGg -3'
miRNA:   3'- ggCGGgCGCCCCuGCCGGGgCCuuCa -5'
5537 5' -66 NC_001806.1 + 34513 0.66 0.515193
Target:  5'- aCgGCCCGgGGGGugGGagCgCGGGccGGg -3'
miRNA:   3'- -GgCGGGCgCCCCugCCg-GgGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 34323 0.69 0.330218
Target:  5'- gCGCCgGaCGGGGcgcuggagauaACGGCCCCcGggGa -3'
miRNA:   3'- gGCGGgC-GCCCC-----------UGCCGGGGcCuuCa -5'
5537 5' -66 NC_001806.1 + 33350 0.68 0.395803
Target:  5'- gCCGCCCcggcuGCaGGGGggcccggagagccGCGGCaCCCGGAc-- -3'
miRNA:   3'- -GGCGGG-----CG-CCCC-------------UGCCG-GGGCCUuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.