miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 33133 0.66 0.524249
Target:  5'- aCCGCCgCGguCGGGGGCcccucGUCCCGGGc-- -3'
miRNA:   3'- -GGCGG-GC--GCCCCUGc----CGGGGCCUuca -5'
5537 5' -66 NC_001806.1 + 33002 0.67 0.462329
Target:  5'- gCCGCCa-CGGGGGcCGGCCgUUGGcGGUa -3'
miRNA:   3'- -GGCGGgcGCCCCU-GCCGG-GGCCuUCA- -5'
5537 5' -66 NC_001806.1 + 31096 0.68 0.388799
Target:  5'- cCCGgCUGCGGGccGCGGuCCCCGGcuGg -3'
miRNA:   3'- -GGCgGGCGCCCc-UGCC-GGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 30848 0.69 0.323369
Target:  5'- cCCGCgcugcuucugggCCGCGGGGGCcgaGGaagugugCCCGGAAGa -3'
miRNA:   3'- -GGCG------------GGCGCCCCUG---CCg------GGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 30784 0.72 0.223002
Target:  5'- uCCGCCUccucggGCGGGGcCGucgguGCCCUGGGAGg -3'
miRNA:   3'- -GGCGGG------CGCCCCuGC-----CGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 30733 0.68 0.412457
Target:  5'- aCC-CCCGCGGGGGCcGCCucuuccgccgCCGGGGc- -3'
miRNA:   3'- -GGcGGGCGCCCCUGcCGG----------GGCCUUca -5'
5537 5' -66 NC_001806.1 + 30255 0.66 0.506202
Target:  5'- gCCGCCUcCGGGGccCGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu-GCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 29962 0.74 0.169175
Target:  5'- gCCGCggcgCCGCGGGGGgcgucUGGCCCCuccGGggGg -3'
miRNA:   3'- -GGCG----GGCGCCCCU-----GCCGGGG---CCuuCa -5'
5537 5' -66 NC_001806.1 + 29115 0.73 0.203604
Target:  5'- gCCGCagggcguggaUGgGGGGGCGGUCUCGGggGg -3'
miRNA:   3'- -GGCGg---------GCgCCCCUGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 28683 0.69 0.337172
Target:  5'- gCCGCCCGCcauauuugGGGGACG-CCgUGGGAc- -3'
miRNA:   3'- -GGCGGGCG--------CCCCUGCcGGgGCCUUca -5'
5537 5' -66 NC_001806.1 + 27315 0.66 0.479647
Target:  5'- gCGUCCGCcgagucuucGGGGccCGGCCCauugggCGGGAGUu -3'
miRNA:   3'- gGCGGGCG---------CCCCu-GCCGGG------GCCUUCA- -5'
5537 5' -66 NC_001806.1 + 27230 0.66 0.470948
Target:  5'- gCCaGCCCGCccucacagGGcGGGCcGCCUCGGggGc -3'
miRNA:   3'- -GG-CGGGCG--------CC-CCUGcCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 27090 0.66 0.524249
Target:  5'- -gGCCCGCGGaGcCGGCCCgGcGAAc- -3'
miRNA:   3'- ggCGGGCGCCcCuGCCGGGgC-CUUca -5'
5537 5' -66 NC_001806.1 + 26695 0.68 0.412457
Target:  5'- aCCGCCC--GGcGugGGCCCgGGggGc -3'
miRNA:   3'- -GGCGGGcgCCcCugCCGGGgCCuuCa -5'
5537 5' -66 NC_001806.1 + 25931 0.68 0.404472
Target:  5'- gCGCgCGCGGcGGGCgugggggcggGGCCgCGGGAGc -3'
miRNA:   3'- gGCGgGCGCC-CCUG----------CCGGgGCCUUCa -5'
5537 5' -66 NC_001806.1 + 24520 0.68 0.388799
Target:  5'- gCUGCCgGCgcuggacggccGGGcGGCGGCCUCGGGGa- -3'
miRNA:   3'- -GGCGGgCG-----------CCC-CUGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 23937 0.66 0.479647
Target:  5'- gCCGgCgGCGGGGccugggGgGGCCgCCGGAguGGUc -3'
miRNA:   3'- -GGCgGgCGCCCC------UgCCGG-GGCCU--UCA- -5'
5537 5' -66 NC_001806.1 + 23586 0.73 0.185687
Target:  5'- gCGCCCGCGGccGCcGCCCUGGAGGc -3'
miRNA:   3'- gGCGGGCGCCccUGcCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 23318 0.67 0.436984
Target:  5'- gCCGCCCGgaGGcGGCGGCCCgCGacccccGAAGa -3'
miRNA:   3'- -GGCGGGCg-CCcCUGCCGGG-GC------CUUCa -5'
5537 5' -66 NC_001806.1 + 22651 0.71 0.272404
Target:  5'- gUGCCCGCcGGGuACGGCgCCGcGggGa -3'
miRNA:   3'- gGCGGGCGcCCC-UGCCGgGGC-CuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.