Results 121 - 140 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 5' | -66 | NC_001806.1 | + | 22571 | 0.66 | 0.497278 |
Target: 5'- -gGgCCGCGGGGA--GCCCCGGc--- -3' miRNA: 3'- ggCgGGCGCCCCUgcCGGGGCCuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 22115 | 0.68 | 0.396586 |
Target: 5'- gCCGCCCGggccucugGGGGGC-GCCCgaggCGGAGGa -3' miRNA: 3'- -GGCGGGCg-------CCCCUGcCGGG----GCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 22074 | 0.67 | 0.428715 |
Target: 5'- cCCGCCCcCGGGGcgggugcuguACGGCggCCUGGgcGa -3' miRNA: 3'- -GGCGGGcGCCCC----------UGCCG--GGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 21497 | 0.67 | 0.462329 |
Target: 5'- gCCGCCgGCGaccGGGcccCGGCCCggggccgcgaaCGGGAGg -3' miRNA: 3'- -GGCGGgCGC---CCCu--GCCGGG-----------GCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 21282 | 0.67 | 0.445344 |
Target: 5'- aCGCCCgGCGggacGGGAgGGCCCCcgcGGcGGg -3' miRNA: 3'- gGCGGG-CGC----CCCUgCCGGGG---CCuUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 20707 | 0.69 | 0.3514 |
Target: 5'- uCCGUU--CGGGGugGGCCcgCCGGggGg -3' miRNA: 3'- -GGCGGgcGCCCCugCCGG--GGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 20597 | 0.68 | 0.388799 |
Target: 5'- cCCGCCCauggcagauggcGCGGauGGGCGGggCCGGggGUu -3' miRNA: 3'- -GGCGGG------------CGCC--CCUGCCggGGCCuuCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 20319 | 0.71 | 0.243949 |
Target: 5'- cCCGCCCGCcggccaauggGGGGGCGGCaaggCGGgcGg -3' miRNA: 3'- -GGCGGGCG----------CCCCUGCCGgg--GCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 20178 | 0.66 | 0.470948 |
Target: 5'- cCCGCCCcCGGGGcCGGCg-CGGAGu- -3' miRNA: 3'- -GGCGGGcGCCCCuGCCGggGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 18883 | 0.68 | 0.404472 |
Target: 5'- aCGUgCGCGGGGccagACGGgCUCGGcAGUa -3' miRNA: 3'- gGCGgGCGCCCC----UGCCgGGGCCuUCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 18132 | 0.68 | 0.381113 |
Target: 5'- gCCGUUCGCGGcGaACGGCCCCGa---- -3' miRNA: 3'- -GGCGGGCGCC-CcUGCCGGGGCcuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 17580 | 0.67 | 0.453793 |
Target: 5'- cCUGUuuGCGGaGGACaGCCCCuuGGAGa- -3' miRNA: 3'- -GGCGggCGCC-CCUGcCGGGG--CCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 11682 | 0.66 | 0.521526 |
Target: 5'- gUCGCUCGCGuGGcauuaGAUGGggguucgugguugaCCCCGGGAGg -3' miRNA: 3'- -GGCGGGCGC-CC-----CUGCC--------------GGGGCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 11358 | 0.66 | 0.500839 |
Target: 5'- gCCGCCCcaGCGGGcuccgacucuucggcGAUGGCCgucaGGGAGg -3' miRNA: 3'- -GGCGGG--CGCCC---------------CUGCCGGgg--CCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 9945 | 0.69 | 0.350679 |
Target: 5'- -gGCCggaguguUGUGGGGACGcGUCCCGGAAc- -3' miRNA: 3'- ggCGG-------GCGCCCCUGC-CGGGGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 6659 | 0.69 | 0.337172 |
Target: 5'- cCUGCUCGuCGGGggggagcaugucGugGGCCCUGGAAa- -3' miRNA: 3'- -GGCGGGC-GCCC------------CugCCGGGGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 6310 | 0.67 | 0.420538 |
Target: 5'- cCCGCCCaccccacccacGaaacacaGGGGACGcaCCCCGGggGc -3' miRNA: 3'- -GGCGGG-----------Cg------CCCCUGCc-GGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 6070 | 0.77 | 0.107486 |
Target: 5'- gCCgGCCC-CGGGGGCGGgCCCGGgcGg -3' miRNA: 3'- -GG-CGGGcGCCCCUGCCgGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 5948 | 0.71 | 0.260714 |
Target: 5'- aCCGCCCcaaGGGGGCggGGCCgCCGGGu-- -3' miRNA: 3'- -GGCGGGcg-CCCCUG--CCGG-GGCCUuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 5098 | 0.66 | 0.515193 |
Target: 5'- gCgGCCCGuCGGuGG--GGCCCgGGGAGc -3' miRNA: 3'- -GgCGGGC-GCC-CCugCCGGGgCCUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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