miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 34770 0.71 0.260714
Target:  5'- -aGCCgGCGGGG-CGGUUCgGGggGg -3'
miRNA:   3'- ggCGGgCGCCCCuGCCGGGgCCuuCa -5'
5537 5' -66 NC_001806.1 + 120878 0.71 0.260714
Target:  5'- gCCGCCUGguccccCGGGGACcuuGCCCCGGccGg -3'
miRNA:   3'- -GGCGGGC------GCCCCUGc--CGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 5948 0.71 0.260714
Target:  5'- aCCGCCCcaaGGGGGCggGGCCgCCGGGu-- -3'
miRNA:   3'- -GGCGGGcg-CCCCUG--CCGG-GGCCUuca -5'
5537 5' -66 NC_001806.1 + 56842 0.71 0.266507
Target:  5'- aCCG-CCGCGGccaGGGCGGCCgCGGcGGg -3'
miRNA:   3'- -GGCgGGCGCC---CCUGCCGGgGCCuUCa -5'
5537 5' -66 NC_001806.1 + 92913 0.71 0.272404
Target:  5'- -gGUCCGCGcagggcGGGGCGGgCCUGGAGGc -3'
miRNA:   3'- ggCGGGCGC------CCCUGCCgGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 22651 0.71 0.272404
Target:  5'- gUGCCCGCcGGGuACGGCgCCGcGggGa -3'
miRNA:   3'- gGCGGGCGcCCC-UGCCGgGGC-CuuCa -5'
5537 5' -66 NC_001806.1 + 2501 0.7 0.282668
Target:  5'- gCCGCCgCacgcggccugggcgGCGGGGGCGGgCCCGGc--- -3'
miRNA:   3'- -GGCGG-G--------------CGCCCCUGCCgGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 70153 0.71 0.249436
Target:  5'- aCCGgCCGCccGGGGCGGCCUCGGc--- -3'
miRNA:   3'- -GGCgGGCGc-CCCUGCCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 20319 0.71 0.243949
Target:  5'- cCCGCCCGCcggccaauggGGGGGCGGCaaggCGGgcGg -3'
miRNA:   3'- -GGCGGGCG----------CCCCUGCCGgg--GCCuuCa -5'
5537 5' -66 NC_001806.1 + 72491 0.71 0.243406
Target:  5'- aCCcCCUGCGGGGcgagaucGCGGgCCUGGggGa -3'
miRNA:   3'- -GGcGGGCGCCCC-------UGCCgGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 4175 0.73 0.203604
Target:  5'- cCCGCCCcggggGCGGGGGCccGGCgCCGGGc-- -3'
miRNA:   3'- -GGCGGG-----CGCCCCUG--CCGgGGCCUuca -5'
5537 5' -66 NC_001806.1 + 29115 0.73 0.203604
Target:  5'- gCCGCagggcguggaUGgGGGGGCGGUCUCGGggGg -3'
miRNA:   3'- -GGCGg---------GCgCCCCUGCCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 55526 0.72 0.212629
Target:  5'- -gGCCCGgGGGGuuuagugggGCGGCCCgacuuggCGGggGUg -3'
miRNA:   3'- ggCGGGCgCCCC---------UGCCGGG-------GCCuuCA- -5'
5537 5' -66 NC_001806.1 + 152088 0.72 0.213114
Target:  5'- gCGCCCGCGGGG--GGCCCgGGc--- -3'
miRNA:   3'- gGCGGGCGCCCCugCCGGGgCCuuca -5'
5537 5' -66 NC_001806.1 + 128047 0.72 0.213114
Target:  5'- aUGCCCGUGGcGGccACGGCCCCcagguGGggGc -3'
miRNA:   3'- gGCGGGCGCC-CC--UGCCGGGG-----CCuuCa -5'
5537 5' -66 NC_001806.1 + 147175 0.72 0.21801
Target:  5'- cCCGCCCgaggaggcggaaGCGGaGGaggacGCGGCCCCGGcGGc -3'
miRNA:   3'- -GGCGGG------------CGCC-CC-----UGCCGGGGCCuUCa -5'
5537 5' -66 NC_001806.1 + 30784 0.72 0.223002
Target:  5'- uCCGCCUccucggGCGGGGcCGucgguGCCCUGGGAGg -3'
miRNA:   3'- -GGCGGG------CGCCCCuGC-----CGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 52933 0.72 0.228091
Target:  5'- uCgGCCacggguGUGGGGACccGCCCCGGAGGg -3'
miRNA:   3'- -GgCGGg-----CGCCCCUGc-CGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 2667 0.72 0.232755
Target:  5'- gCGgCCGCGGGcGCcgccguguggcugGGCCCCGGggGc -3'
miRNA:   3'- gGCgGGCGCCCcUG-------------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 49153 0.72 0.233278
Target:  5'- cUCGCCCGUGGcGGACGaGCCagCGGgcGa -3'
miRNA:   3'- -GGCGGGCGCC-CCUGC-CGGg-GCCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.