Results 101 - 120 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5537 | 5' | -66 | NC_001806.1 | + | 66812 | 0.7 | 0.303462 |
Target: 5'- aCgGCCgaGCGGGGcCGGCCCgGGuGGc -3' miRNA: 3'- -GgCGGg-CGCCCCuGCCGGGgCCuUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 72524 | 0.7 | 0.303462 |
Target: 5'- -aGCCCuGCGucGGcGugGGCCCCcGGGAGg -3' miRNA: 3'- ggCGGG-CGC--CC-CugCCGGGG-CCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 50642 | 0.7 | 0.315958 |
Target: 5'- aCGCCCgggcguGCGGGGAcgcgcacCGGCgCCGGGAc- -3' miRNA: 3'- gGCGGG------CGCCCCU-------GCCGgGGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 151537 | 0.7 | 0.316627 |
Target: 5'- gCGCCCGUGGgcccGGGCGGCCgggggcggCGGggGc -3' miRNA: 3'- gGCGGGCGCC----CCUGCCGGg-------GCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 113838 | 0.7 | 0.316627 |
Target: 5'- aCGCCCugauGCGGcGcGCGGCCCUGGAc-- -3' miRNA: 3'- gGCGGG----CGCC-CcUGCCGGGGCCUuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 56842 | 0.71 | 0.266507 |
Target: 5'- aCCG-CCGCGGccaGGGCGGCCgCGGcGGg -3' miRNA: 3'- -GGCgGGCGCC---CCUGCCGGgGCCuUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 5948 | 0.71 | 0.260714 |
Target: 5'- aCCGCCCcaaGGGGGCggGGCCgCCGGGu-- -3' miRNA: 3'- -GGCGGGcg-CCCCUG--CCGG-GGCCUuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 147175 | 0.72 | 0.21801 |
Target: 5'- cCCGCCCgaggaggcggaaGCGGaGGaggacGCGGCCCCGGcGGc -3' miRNA: 3'- -GGCGGG------------CGCC-CC-----UGCCGGGGCCuUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 30784 | 0.72 | 0.223002 |
Target: 5'- uCCGCCUccucggGCGGGGcCGucgguGCCCUGGGAGg -3' miRNA: 3'- -GGCGGG------CGCCCCuGC-----CGGGGCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 52933 | 0.72 | 0.228091 |
Target: 5'- uCgGCCacggguGUGGGGACccGCCCCGGAGGg -3' miRNA: 3'- -GgCGGg-----CGCCCCUGc-CGGGGCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 2667 | 0.72 | 0.232755 |
Target: 5'- gCGgCCGCGGGcGCcgccguguggcugGGCCCCGGggGc -3' miRNA: 3'- gGCgGGCGCCCcUG-------------CCGGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 49153 | 0.72 | 0.233278 |
Target: 5'- cUCGCCCGUGGcGGACGaGCCagCGGgcGa -3' miRNA: 3'- -GGCGGGCGCC-CCUGC-CGGg-GCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 72491 | 0.71 | 0.243406 |
Target: 5'- aCCcCCUGCGGGGcgagaucGCGGgCCUGGggGa -3' miRNA: 3'- -GGcGGGCGCCCC-------UGCCgGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 20319 | 0.71 | 0.243949 |
Target: 5'- cCCGCCCGCcggccaauggGGGGGCGGCaaggCGGgcGg -3' miRNA: 3'- -GGCGGGCG----------CCCCUGCCGgg--GCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 70153 | 0.71 | 0.249436 |
Target: 5'- aCCGgCCGCccGGGGCGGCCUCGGc--- -3' miRNA: 3'- -GGCgGGCGc-CCCUGCCGGGGCCuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 150100 | 0.71 | 0.249436 |
Target: 5'- -gGCCCaccGCGGGG-CGGCCCCGuccccGggGa -3' miRNA: 3'- ggCGGG---CGCCCCuGCCGGGGC-----CuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 43577 | 0.71 | 0.255023 |
Target: 5'- aUGUCCGUGGGGGCGGCugacaaguCCgCGGAuGUg -3' miRNA: 3'- gGCGGGCGCCCCUGCCG--------GG-GCCUuCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 109077 | 0.71 | 0.255023 |
Target: 5'- aCGCCCGCGGGGc---CCCCGcGGAGc -3' miRNA: 3'- gGCGGGCGCCCCugccGGGGC-CUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 34770 | 0.71 | 0.260714 |
Target: 5'- -aGCCgGCGGGG-CGGUUCgGGggGg -3' miRNA: 3'- ggCGGgCGCCCCuGCCGGGgCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 120878 | 0.71 | 0.260714 |
Target: 5'- gCCGCCUGguccccCGGGGACcuuGCCCCGGccGg -3' miRNA: 3'- -GGCGGGC------GCCCCUGc--CGGGGCCuuCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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