miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 152088 0.72 0.213114
Target:  5'- gCGCCCGCGGGG--GGCCCgGGc--- -3'
miRNA:   3'- gGCGGGCGCCCCugCCGGGgCCuuca -5'
5537 5' -66 NC_001806.1 + 151537 0.7 0.316627
Target:  5'- gCGCCCGUGGgcccGGGCGGCCgggggcggCGGggGc -3'
miRNA:   3'- gGCGGGCGCC----CCUGCCGGg-------GCCuuCa -5'
5537 5' -66 NC_001806.1 + 151451 0.67 0.445344
Target:  5'- gCGgCgGCGGGG-CGGCCgCGGgcGc -3'
miRNA:   3'- gGCgGgCGCCCCuGCCGGgGCCuuCa -5'
5537 5' -66 NC_001806.1 + 150100 0.71 0.249436
Target:  5'- -gGCCCaccGCGGGG-CGGCCCCGuccccGggGa -3'
miRNA:   3'- ggCGGG---CGCCCCuGCCGGGGC-----CuuCa -5'
5537 5' -66 NC_001806.1 + 149779 0.67 0.432011
Target:  5'- gCGCCCgGCcccucaccucgcgcuGGGGGCGGCCCucaggcCGGcGGGUa -3'
miRNA:   3'- gGCGGG-CG---------------CCCCUGCCGGG------GCC-UUCA- -5'
5537 5' -66 NC_001806.1 + 148387 0.67 0.436984
Target:  5'- cUCGUCCGU--GGugGGCUCCGGGugGGUg -3'
miRNA:   3'- -GGCGGGCGccCCugCCGGGGCCU--UCA- -5'
5537 5' -66 NC_001806.1 + 148146 0.68 0.411654
Target:  5'- cCCGCCCGUcacgGGGGGCGcggcggcGCCUCugcguGGggGg -3'
miRNA:   3'- -GGCGGGCG----CCCCUGC-------CGGGG-----CCuuCa -5'
5537 5' -66 NC_001806.1 + 147829 0.68 0.396586
Target:  5'- -gGCCUGUGGGGAgaGGCCggGGggGa -3'
miRNA:   3'- ggCGGGCGCCCCUg-CCGGggCCuuCa -5'
5537 5' -66 NC_001806.1 + 147772 0.68 0.396586
Target:  5'- gCCGCggaCGCGGGG--GGCCCggggCGGggGg -3'
miRNA:   3'- -GGCGg--GCGCCCCugCCGGG----GCCuuCa -5'
5537 5' -66 NC_001806.1 + 147739 0.66 0.470948
Target:  5'- aCgGCCgCGCGGGGGCgcgcgGGUCCCGa---- -3'
miRNA:   3'- -GgCGG-GCGCCCCUG-----CCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 147677 0.86 0.022202
Target:  5'- uCCGCCCcgggggccggggcGCGGGGGCgGGCCCCGGAGGc -3'
miRNA:   3'- -GGCGGG-------------CGCCCCUG-CCGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 147500 0.75 0.146869
Target:  5'- gCGCCgGaGGGGGCGGCgCCgCGGGAGg -3'
miRNA:   3'- gGCGGgCgCCCCUGCCG-GG-GCCUUCa -5'
5537 5' -66 NC_001806.1 + 147230 0.7 0.284511
Target:  5'- gCC-CCCGCGGGGGucggGGCCgaGGAGGa -3'
miRNA:   3'- -GGcGGGCGCCCCUg---CCGGggCCUUCa -5'
5537 5' -66 NC_001806.1 + 147175 0.72 0.21801
Target:  5'- cCCGCCCgaggaggcggaaGCGGaGGaggacGCGGCCCCGGcGGc -3'
miRNA:   3'- -GGCGGG------------CGCC-CC-----UGCCGGGGCCuUCa -5'
5537 5' -66 NC_001806.1 + 147040 1.07 0.000648
Target:  5'- gCCGCCCGCGGGGACGGCCCCGGAAGUc -3'
miRNA:   3'- -GGCGGGCGCCCCUGCCGGGGCCUUCA- -5'
5537 5' -66 NC_001806.1 + 144322 0.7 0.297039
Target:  5'- cCCGCCCGUGuGGGuaucCGGCCCCc----- -3'
miRNA:   3'- -GGCGGGCGC-CCCu---GCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 143787 0.67 0.420538
Target:  5'- cCCGCgaCGgGGGGACGGaggggaCGGAGGg -3'
miRNA:   3'- -GGCGg-GCgCCCCUGCCggg---GCCUUCa -5'
5537 5' -66 NC_001806.1 + 136246 0.68 0.396586
Target:  5'- gCUGCCCGCugauGGGGucuCGcacgagccagucGCCCCGGcGGUg -3'
miRNA:   3'- -GGCGGGCG----CCCCu--GC------------CGGGGCCuUCA- -5'
5537 5' -66 NC_001806.1 + 135242 0.66 0.515193
Target:  5'- -aGCCCGUGauGGGCGcGCcuaCCCGGggGg -3'
miRNA:   3'- ggCGGGCGCc-CCUGC-CG---GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 135062 0.77 0.097512
Target:  5'- aCCGgcCCCGCGGGGACGcGCCgggCCGGAAa- -3'
miRNA:   3'- -GGC--GGGCGCCCCUGC-CGG---GGCCUUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.