miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 21497 0.67 0.462329
Target:  5'- gCCGCCgGCGaccGGGcccCGGCCCggggccgcgaaCGGGAGg -3'
miRNA:   3'- -GGCGGgCGC---CCCu--GCCGGG-----------GCCUUCa -5'
5537 5' -66 NC_001806.1 + 41371 0.67 0.461471
Target:  5'- gCCGCCa--GGGGGCaucacggGGCCCUGGgcGc -3'
miRNA:   3'- -GGCGGgcgCCCCUG-------CCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 17580 0.67 0.453793
Target:  5'- cCUGUuuGCGGaGGACaGCCCCuuGGAGa- -3'
miRNA:   3'- -GGCGggCGCC-CCUGcCGGGG--CCUUca -5'
5537 5' -66 NC_001806.1 + 21282 0.67 0.445344
Target:  5'- aCGCCCgGCGggacGGGAgGGCCCCcgcGGcGGg -3'
miRNA:   3'- gGCGGG-CGC----CCCUgCCGGGG---CCuUCa -5'
5537 5' -66 NC_001806.1 + 55778 0.67 0.445344
Target:  5'- aCCGCucCCGCGGugaucGugGGCCCggUGGAGGc -3'
miRNA:   3'- -GGCG--GGCGCCc----CugCCGGG--GCCUUCa -5'
5537 5' -66 NC_001806.1 + 151451 0.67 0.445344
Target:  5'- gCGgCgGCGGGG-CGGCCgCGGgcGc -3'
miRNA:   3'- gGCgGgCGCCCCuGCCGGgGCCuuCa -5'
5537 5' -66 NC_001806.1 + 52877 0.67 0.436984
Target:  5'- aCCGCCgGCGGcGACGuGCCCCu----- -3'
miRNA:   3'- -GGCGGgCGCCcCUGC-CGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 148387 0.67 0.436984
Target:  5'- cUCGUCCGU--GGugGGCUCCGGGugGGUg -3'
miRNA:   3'- -GGCGGGCGccCCugCCGGGGCCU--UCA- -5'
5537 5' -66 NC_001806.1 + 23318 0.67 0.436984
Target:  5'- gCCGCCCGgaGGcGGCGGCCCgCGacccccGAAGa -3'
miRNA:   3'- -GGCGGGCg-CCcCUGCCGGG-GC------CUUCa -5'
5537 5' -66 NC_001806.1 + 149779 0.67 0.432011
Target:  5'- gCGCCCgGCcccucaccucgcgcuGGGGGCGGCCCucaggcCGGcGGGUa -3'
miRNA:   3'- gGCGGG-CG---------------CCCCUGCCGGG------GCC-UUCA- -5'
5537 5' -66 NC_001806.1 + 44504 0.67 0.428715
Target:  5'- gCCGUuuGCcGGGACGGUgaCCGGgcGa -3'
miRNA:   3'- -GGCGggCGcCCCUGCCGg-GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 22074 0.67 0.428715
Target:  5'- cCCGCCCcCGGGGcgggugcuguACGGCggCCUGGgcGa -3'
miRNA:   3'- -GGCGGGcGCCCC----------UGCCG--GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 57617 0.67 0.427072
Target:  5'- cCCGcCCCGUcaGGGGAauccaaaaccauaCGGgguuugggggcccCCCCGGAAGg -3'
miRNA:   3'- -GGC-GGGCG--CCCCU-------------GCC-------------GGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 3047 0.67 0.420538
Target:  5'- gCCGCCaGCaGGGGGCgcaGGCUCUGGuuGUc -3'
miRNA:   3'- -GGCGGgCG-CCCCUG---CCGGGGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 6310 0.67 0.420538
Target:  5'- cCCGCCCaccccacccacGaaacacaGGGGACGcaCCCCGGggGc -3'
miRNA:   3'- -GGCGGG-----------Cg------CCCCUGCc-GGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 143787 0.67 0.420538
Target:  5'- cCCGCgaCGgGGGGACGGaggggaCGGAGGg -3'
miRNA:   3'- -GGCGg-GCgCCCCUGCCggg---GCCUUCa -5'
5537 5' -66 NC_001806.1 + 30733 0.68 0.412457
Target:  5'- aCC-CCCGCGGGGGCcGCCucuuccgccgCCGGGGc- -3'
miRNA:   3'- -GGcGGGCGCCCCUGcCGG----------GGCCUUca -5'
5537 5' -66 NC_001806.1 + 3129 0.68 0.412457
Target:  5'- cCCGCggcagCGCGGGGcccAgGGCCCCGGc--- -3'
miRNA:   3'- -GGCGg----GCGCCCC---UgCCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 26695 0.68 0.412457
Target:  5'- aCCGCCC--GGcGugGGCCCgGGggGc -3'
miRNA:   3'- -GGCGGGcgCCcCugCCGGGgCCuuCa -5'
5537 5' -66 NC_001806.1 + 148146 0.68 0.411654
Target:  5'- cCCGCCCGUcacgGGGGGCGcggcggcGCCUCugcguGGggGg -3'
miRNA:   3'- -GGCGGGCG----CCCCUGC-------CGGGG-----CCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.