miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 89265 0.65 0.482298
Target:  5'- cCGGCuGGCUCCgcgagGGCCGGcGGGCgcaaaaaacccggaCGCcGCc -3'
miRNA:   3'- -GCCG-CCGAGG-----UCGGCC-CCUG--------------GCGcCG- -5'
5538 3' -66.7 NC_001806.1 + 120320 0.66 0.433627
Target:  5'- uGGgGGgaCggggCGGUCGGGGGCgGCGGg -3'
miRNA:   3'- gCCgCCgaG----GUCGGCCCCUGgCGCCg -5'
5538 3' -66.7 NC_001806.1 + 41692 0.66 0.433627
Target:  5'- gGGCGGCgugCCGcccGCCGuguccuccccGGGACUgGCGGg -3'
miRNA:   3'- gCCGCCGa--GGU---CGGC----------CCCUGG-CGCCg -5'
5538 3' -66.7 NC_001806.1 + 21975 0.66 0.450387
Target:  5'- cCGGCGGgUCgAGCUGGacGCCGacgcgaccucCGGCg -3'
miRNA:   3'- -GCCGCCgAGgUCGGCCccUGGC----------GCCG- -5'
5538 3' -66.7 NC_001806.1 + 119188 0.66 0.441962
Target:  5'- uGGCGccgccGCcccgCCGGCCGcgaaGGaGGCUGCGGCc -3'
miRNA:   3'- gCCGC-----CGa---GGUCGGC----CC-CUGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 9534 0.66 0.450387
Target:  5'- cCGGgGGggCCAGCCacGGGACC-UGGUc -3'
miRNA:   3'- -GCCgCCgaGGUCGGc-CCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 15167 0.66 0.450387
Target:  5'- aCGGgaaGGC-UgGGCCcGGGGACUGgGGUa -3'
miRNA:   3'- -GCCg--CCGaGgUCGG-CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 59977 0.66 0.450387
Target:  5'- gGcGCGGCaccucUCUGGCCucGGGGACC-CGGg -3'
miRNA:   3'- gC-CGCCG-----AGGUCGG--CCCCUGGcGCCg -5'
5538 3' -66.7 NC_001806.1 + 24003 0.66 0.433627
Target:  5'- uGGCGGCccuggccaaCCGGCUGuGcGGGCCGgacaCGGCc -3'
miRNA:   3'- gCCGCCGa--------GGUCGGC-C-CCUGGC----GCCG- -5'
5538 3' -66.7 NC_001806.1 + 44620 0.66 0.441962
Target:  5'- cCGGCGucaGCUcgCCGGCauagaCGaGGGACCGCccucGGCg -3'
miRNA:   3'- -GCCGC---CGA--GGUCG-----GC-CCCUGGCG----CCG- -5'
5538 3' -66.7 NC_001806.1 + 38395 0.66 0.431145
Target:  5'- gCGGCGGCUcuccgCCGGCuCGGGGGgguccucguccagaUCGCuGUc -3'
miRNA:   3'- -GCCGCCGA-----GGUCG-GCCCCU--------------GGCGcCG- -5'
5538 3' -66.7 NC_001806.1 + 8845 0.66 0.43695
Target:  5'- aGuaGGCUUCgaccgaaacuggcgaGGCCGuGGGAUaaaGCGGCa -3'
miRNA:   3'- gCcgCCGAGG---------------UCGGC-CCCUGg--CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 147800 0.66 0.450387
Target:  5'- gGGCGGagcCUGGCaUGGGcGCCGCGGg -3'
miRNA:   3'- gCCGCCga-GGUCG-GCCCcUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 52610 0.66 0.441962
Target:  5'- gGGUGGgaCCuGUCGGGaaaagauucagcGGgCGCGGCg -3'
miRNA:   3'- gCCGCCgaGGuCGGCCC------------CUgGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 50683 0.66 0.441962
Target:  5'- gCGGCGGCcacgcgcgccauUCUGGCCGccGGGCUcguccugcaGCGGCu -3'
miRNA:   3'- -GCCGCCG------------AGGUCGGCc-CCUGG---------CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 1499 0.66 0.455484
Target:  5'- gGGCgucgucgucgGGCUCCAGCagggCGcGGGcgcaaaagucccuCCGCGGCc -3'
miRNA:   3'- gCCG----------CCGAGGUCG----GC-CCCu------------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 25937 0.66 0.441962
Target:  5'- gCGGCgGGCguggGGgCGGGG-CCGCGGg -3'
miRNA:   3'- -GCCG-CCGagg-UCgGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 45328 0.66 0.433627
Target:  5'- gGGCgGGCgcgaUgGGaUCGGGGGCgCGCGGUg -3'
miRNA:   3'- gCCG-CCGa---GgUC-GGCCCCUG-GCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 90318 0.66 0.433627
Target:  5'- uGGUcgugGGUUCUcgcacgacggGGCuCGGGGguACCGCGGUg -3'
miRNA:   3'- gCCG----CCGAGG----------UCG-GCCCC--UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 45284 0.66 0.441962
Target:  5'- gCGGCGGgagacgcgggCCcGCgCGGGGAgCCGCccGGCg -3'
miRNA:   3'- -GCCGCCga--------GGuCG-GCCCCU-GGCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.