miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 1499 0.66 0.455484
Target:  5'- gGGCgucgucgucgGGCUCCAGCagggCGcGGGcgcaaaagucccuCCGCGGCc -3'
miRNA:   3'- gCCG----------CCGAGGUCG----GC-CCCu------------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 1752 0.67 0.409183
Target:  5'- cCGGCGGUaCUcGCgCGGGGACaugggcacCGGCg -3'
miRNA:   3'- -GCCGCCGaGGuCG-GCCCCUGgc------GCCG- -5'
5538 3' -66.7 NC_001806.1 + 1847 0.67 0.409183
Target:  5'- gCGGCGGCgc--GUCGGGguacaggcgcgcGugCGCGGCc -3'
miRNA:   3'- -GCCGCCGagguCGGCCC------------CugGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 2218 0.68 0.347667
Target:  5'- aGGCGGCcgugUCCggcccgcacAGCCGGuuggccaGGGCCGCcagcaGGCa -3'
miRNA:   3'- gCCGCCG----AGG---------UCGGCC-------CCUGGCG-----CCG- -5'
5538 3' -66.7 NC_001806.1 + 2543 0.67 0.401228
Target:  5'- cCGcGCGGCgaucgaGGCCaGGGcCCGCGGg -3'
miRNA:   3'- -GC-CGCCGagg---UCGGcCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 2662 0.67 0.417236
Target:  5'- gGGCGGC---GGCCGcGGGcGCCGCcguguGGCu -3'
miRNA:   3'- gCCGCCGaggUCGGC-CCC-UGGCG-----CCG- -5'
5538 3' -66.7 NC_001806.1 + 2698 0.69 0.31982
Target:  5'- cCGGgGGCUgccgccgCCAGCCgcccaGGGGGUCGgGGCc -3'
miRNA:   3'- -GCCgCCGA-------GGUCGG-----CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 2739 0.72 0.185444
Target:  5'- uCGGCGGg-CCGGCgcgacacggccaCGGGGcgcgggcgggccugcGCCGCGGCg -3'
miRNA:   3'- -GCCGCCgaGGUCG------------GCCCC---------------UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 2818 0.72 0.201045
Target:  5'- gGGCgGGCUCgGGCCccgggggcguggaGGGGGgCGCGGg -3'
miRNA:   3'- gCCG-CCGAGgUCGG-------------CCCCUgGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 2869 0.7 0.269827
Target:  5'- gGGCgcgGGCgUCCgAGCCGGGGGcguCCGCGccGCu -3'
miRNA:   3'- gCCG---CCG-AGG-UCGGCCCCU---GGCGC--CG- -5'
5538 3' -66.7 NC_001806.1 + 2942 0.68 0.360751
Target:  5'- gGGCGGCcgggCCgGGCCGGGacucuugcgcuugcGccccucCCGCGGCg -3'
miRNA:   3'- gCCGCCGa---GG-UCGGCCC--------------Cu-----GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 3002 0.68 0.348384
Target:  5'- gCGGCGGCcgCCAGCgcguCGGcggcguccGGugCGCuGGCc -3'
miRNA:   3'- -GCCGCCGa-GGUCG----GCC--------CCugGCG-CCG- -5'
5538 3' -66.7 NC_001806.1 + 3095 0.75 0.128574
Target:  5'- gCGGCGGCggCCgcggagcucggcaGGCgCGGGucCCGCGGCa -3'
miRNA:   3'- -GCCGCCGa-GG-------------UCG-GCCCcuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 3306 0.7 0.247009
Target:  5'- gCGGCGGCggCGGggaagCGGGGcCCGCGGg -3'
miRNA:   3'- -GCCGCCGagGUCg----GCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 3334 0.66 0.458899
Target:  5'- nGGUccCUCCGGCCgcgGGGGGCUgGCGGg -3'
miRNA:   3'- gCCGccGAGGUCGG---CCCCUGG-CGCCg -5'
5538 3' -66.7 NC_001806.1 + 3458 0.66 0.467496
Target:  5'- aCGGCcacGCggCCGGCCuGGG--CGCGGCg -3'
miRNA:   3'- -GCCGc--CGa-GGUCGGcCCCugGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 3557 0.67 0.401228
Target:  5'- gCGGCGGa--CAGCCGccccagggcggcGaGGAuccCCGCGGCg -3'
miRNA:   3'- -GCCGCCgagGUCGGC------------C-CCU---GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 3644 0.73 0.175372
Target:  5'- aCGGCGGCgacccccucgUCAucugcgccggcGCCGGGGcuccCCGCGGCc -3'
miRNA:   3'- -GCCGCCGa---------GGU-----------CGGCCCCu---GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 3784 0.73 0.179508
Target:  5'- uCGGCGGCUCaUGGCCacGGcGGccGCCGCGuGCg -3'
miRNA:   3'- -GCCGCCGAG-GUCGG--CC-CC--UGGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 4045 0.67 0.425385
Target:  5'- gCGGCGucGC-CCAGCuCGGGcgcccacacGGCCGCcggGGCg -3'
miRNA:   3'- -GCCGC--CGaGGUCG-GCCC---------CUGGCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.