miRNA display CGI


Results 61 - 80 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 126572 0.67 0.401228
Target:  5'- aGGCGGUgcUCC-GCCGcGGAUCG-GGCc -3'
miRNA:   3'- gCCGCCG--AGGuCGGCcCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 113382 0.67 0.401228
Target:  5'- cCGGCGGCguUCCGGgacgcCCGGGGccuggaGCUGgGGg -3'
miRNA:   3'- -GCCGCCG--AGGUC-----GGCCCC------UGGCgCCg -5'
5538 3' -66.7 NC_001806.1 + 82720 0.67 0.401228
Target:  5'- -cGCGGUgUCCGGgguCUGcGGGGCgGCGGCg -3'
miRNA:   3'- gcCGCCG-AGGUC---GGC-CCCUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 42740 0.67 0.400438
Target:  5'- uGGCGGCgauguggUCCGGUuguagCGGGGucCCGUGcGCc -3'
miRNA:   3'- gCCGCCG-------AGGUCG-----GCCCCu-GGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 25564 0.67 0.393372
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCc -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 75984 0.67 0.393372
Target:  5'- aGcGCGGC-CU--UCGGGG-CCGCGGCc -3'
miRNA:   3'- gC-CGCCGaGGucGGCCCCuGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 132989 0.67 0.393372
Target:  5'- uGGCcGCUCCcucagAGCCcuGGGCCGgGGCc -3'
miRNA:   3'- gCCGcCGAGG-----UCGGccCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 4267 0.67 0.393372
Target:  5'- uCGGCGuccaGCUCgAcccGCCGGGGcuGCC-CGGCc -3'
miRNA:   3'- -GCCGC----CGAGgU---CGGCCCC--UGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 23459 0.67 0.393372
Target:  5'- -cGCGGCgCC--CCGGGccGCCGCGGCg -3'
miRNA:   3'- gcCGCCGaGGucGGCCCc-UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 25532 0.67 0.393372
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCc -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 27008 0.67 0.392592
Target:  5'- gGGCucGGUUCCGgcGCCGGGuggcggaGGCCGaGGCg -3'
miRNA:   3'- gCCG--CCGAGGU--CGGCCC-------CUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 5586 0.67 0.385617
Target:  5'- aCGcCGGCac--GCCGGGGGcCCGUGGCc -3'
miRNA:   3'- -GCcGCCGagguCGGCCCCU-GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 46468 0.67 0.385617
Target:  5'- uGGCGGCggUCCAGCuCuGGGACauguCGCGuccGCg -3'
miRNA:   3'- gCCGCCG--AGGUCG-GcCCCUG----GCGC---CG- -5'
5538 3' -66.7 NC_001806.1 + 14030 0.67 0.377963
Target:  5'- aCGGCcgGGCUaCC-GCgaucuuuauUGGGGGCCGgGGCc -3'
miRNA:   3'- -GCCG--CCGA-GGuCG---------GCCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 21926 0.67 0.377963
Target:  5'- gCGGCGGUggCCGGCCGcgacgccacGGGcccuucacgGCCG-GGCa -3'
miRNA:   3'- -GCCGCCGa-GGUCGGC---------CCC---------UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 12798 0.67 0.375687
Target:  5'- cCGGCgaucaGGC-CCauguuguucgggguGGCCGGGGGaugguaaggcgUCGCGGCg -3'
miRNA:   3'- -GCCG-----CCGaGG--------------UCGGCCCCU-----------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 40917 0.68 0.37342
Target:  5'- aCGGCgaauccguuucgcgaGGUUCC-GCCGuGGGGCCgacuucGUGGCa -3'
miRNA:   3'- -GCCG---------------CCGAGGuCGGC-CCCUGG------CGCCG- -5'
5538 3' -66.7 NC_001806.1 + 103506 0.68 0.37342
Target:  5'- gGGUGGCUCCcgccggauccaaaugAGUcuucggaccucgCGGGGGCCGCuuaaGCg -3'
miRNA:   3'- gCCGCCGAGG---------------UCG------------GCCCCUGGCGc---CG- -5'
5538 3' -66.7 NC_001806.1 + 132751 0.68 0.370412
Target:  5'- uCGGCGGCagccggaugccUCCuGCCcgcggugcGGGaGGCgGUGGCg -3'
miRNA:   3'- -GCCGCCG-----------AGGuCGG--------CCC-CUGgCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 99945 0.68 0.370412
Target:  5'- uGGCGGg-CCGcgcGCCGGGagucGACCccgcGCGGCg -3'
miRNA:   3'- gCCGCCgaGGU---CGGCCC----CUGG----CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.